2023
ReporTree: a surveillance-oriented tool to strengthen the linkage between pathogen genetic clusters and epidemiological data.
Mixão, V., Pinto, M., Sobral, D., Di Pasquale, A., Gomes, J. P., & Borges, V. (2023). Genome Medicine. 15, 43.
DOI: https://doi.org/10.1186/s13073-023-01196-1
Project: BeONE
Assessing potential determinants of the stagnating trend in Salmonella Enteritidis human infections in Europe and options for intervention: A multi-criteria decision analysis.
Chanamé Pinedo, L., Van Goethem, N., Mallioris, P., Pacholewicz, E., Pijnacker, R., Franz, E., & Mughini-Gras, L. (2023). One Health. 16, 100535.
DOI: https://doi.org/10.1016/j.onehlt.2023.100535
Project: ADONIS
Environmental Sampling Methods for Detection of Salmonella Infections in Laying Hens: A Systematic Review and Meta-Analysis.
Pacholewicz, E., Wisselink, H.J., Koene, M.G.J., van der Most, M., Gonzales, J.L. (2023). Microorganisms. 11, 2100.
DOI: https://doi.org/10.3390/microorganisms11082100
Project: ADONIS
Salmonella assessment along the Spanish food chain: Likelihood of Salmonella occurrence in poultry and pig products is maintained across the food chain stages.
Rodríguez, A., Sacristán, C., Iglesias, I. & de la Torre, A. (2023). Zoonoses and Public Health. 00, 1–9.
DOI: https://doi.org/10.1111/zph.13076
Project: MATRIX
The emergence of Brucella canis as a public health threat in Europe: what we know, and what we need to learn.
Djokic, V., Freddi, L., de Massis, F., Lahti, E., Esker, M. V. D., Whatmore, A., Haughey, A., Ferreira, A. C., Garofolo, G., Melzer, F., Sacchini, F., Koets, A., Wyllie, S., Fontbonne, A., Girault, G., Vicente, A. F., McGiven, J., & Ponsart, C. (2023). Emerging microbes & infections. 2249126. Advance online publication.
DOI: https://doi.org/10.1080/22221751.2023.2249126
Project: IDEMBRU
Comparison of 6 DNA extraction methods for isolation of high yield of high molecular weight DNA suitable for shotgun metagenomics Nanopore sequencing to detect bacteria.
Gand, M., Bloemen, B., Vanneste, K., Roosens, N.H.C., & De Keersmaecker, S.C.J. (2023). BMC Genomics. 24, 438.
DOI: https://doi.org/10.1186/s12864-023-09537-5
Project: FARMED
Increased rat-borne zoonotic disease hazard in greener urban areas.
de Cock, M. P., de Vries, A., Fonville, M., Esser, H. J., Mehl, C., Ulrich, R. G., Joeres, M., Hoffmann, D., Eisenberg, T., Schmidt, K., Hulst, M., van der Poel, W. H. M., Sprong, H., & Maas, M. (2023). The Science of the Total Environment. 896, 165069. Advance online publication.
DOI: https://doi.org/10.1016/j.scitotenv.2023.165069
Project: DESIRE
The values and risks of an Intergovernmental Panel for One Health to strengthen pandemic prevention, preparedness, and response.
Hobeika, A., Tibault Stauffer, M. H., Dub, T., van Bortel, W., Beniston, M., Bukachi, S., Burci, G. L., Crump, L., Markotter, W., Pasquale Sepe, L. P., Placella, E., Roche, B., Thiongane, O., Wang, Z., Guérin, F. & van Kleef, E. (2023). The Lancet Global Health, 11 (8), e1301-e1307.
DOI: https://doi.org/10.1016/S2214-109X(23)00246-2
Cystic echinococcosis in Iceland: A brief history and genetic analysis of a 46-year-old Echinococcus isolate collected prior to the eradication of this zoonotic disease.
Saarma, U., Skirnisson, K., Björnsdottir, T., Laurimäe, T., & Kinkar, L. (2023). Parasitology. 150(7), 638-643.
DOI: https://doi.org/10.1017/S0031182023000355
Project: MEmE
Exploring the genetic diversity of genotypes G8 and G10 of the Echinococcus canadensis cluster in Europe based on complete mitochondrial genomes (13 550–13 552 bp).
Laurimäe, T., Kinkar, L., Moks, E., Bagrade, G., & Saarma, U. (2023). Parasitology. 150(7), 631-637.
DOI: https://doi.org/10.1017/S0031182023000331
Project: MEmE
Neglected Tropical Diseases in Italy: introducing IN-NTD, the Italian network for NTDs.
Casulli, A., Antinori, S., Bartoloni, A., D’Amelio, S., Gabrielli, A. F., Gazzoli, G., Rinaldi, L., Bruschi, F., & IN-NTD network (2023). Parasitology. 1–7. Advance online publication.
DOI: https://doi.org/10.1017/S0031182023000422
Project: MEmE
Inactivation of Toxoplasma gondii in dry sausage and processed pork, and quantification of the pathogen in pig tissues prior to production.
Dámek, F., Fremaux, B., Aubert, D., Thoumire, S., Delsart, M., Martin, J. L., Vuillermet, S., Opsteegh, M., Jokelainen, P., Le Roux, D., Boireau, P., Villena, I., & Blaga, R. (2023). Food and Waterborne Parasitology. 31, e00194.
DOI: https://doi.org/10.1016/j.fawpar.2023.e00194
Project: ToxSauQMRA
Microbiological sampling and analyses in the food business operators’ HACCP based self-control programmes.
Aybar Espinoza, M. S., Flink, C., Boisen, N., Scheutz, F. and Käsbohrer, A. (2023). Frontiers in Food Science and Technology. 3, 1110359.
DOI: https://doi.org/10.3389/frfst.2023.1110359
Project: OH-HARMONY-CAP
Molecular Investigations of Two First Brucella suis Biovar 2 Infections Cases in French Dogs.
Girault, G., Djokic, V., Petot-Bottin, F., Perrot, L., Thibaut, B., Sébastien, H., Vicente, A. F., Ponsart, C., Freddi, L. (2023). Pathogens. 12(6), 792.
DOI: https://doi.org/10.3390/pathogens12060792
Project: IDEMBRU
A multi-country One Health foodborne outbreak simulation exercise: cross-sectoral cooperation, data sharing and communication.
Alves, F., Artursson, K., Bloch, J., Brisabois, A., Imberechts, H., Jokelainen, P., La Ragione, R., Lindblad, M., Litzell Forss, R., Marston, D. A., Parvizi, O., Tuominen, L. & Omazic, A. (2023). Frontiers in Public Health. 11, 1121522.
DOI: https://www.frontiersin.org/articles/10.3389/fpubh.2023.1121522
Project: OHEJP SimEx
Increased antimicrobial resistance among non-typhoidal salmonella infections in international travellers returning to the Netherlands
Chanamé-Pinedo, L., Franz, E., Beld, M., Veldman, K., Pijnacker, R., & Mughini-Gras, L. (2023). Journal of Travel Medicine. taad079.
DOI: https://doi.org/10.1093/jtm/taad079
Project: ADONIS
Clonal relation between Salmonella enterica subspecies enterica serovar Dublin strains of bovine and food origin in Germany.
Linde, J., Szabo, I., Tausch, S.H., Deneke, C. and Methner, U. (2023). Frontiers in Veterinary Science. 10, 1081611.
DOI: https://www.frontiersin.org/articles/10.3389/fvets.2023.1081611
Project: BeONE
Defining genomic epidemiology thresholds for common-source bacterial outbreaks: a modelling study.
Duval, A., Opatowski, L., & Brisse, S. (2023). The Lancet Microbe. 4(5), E349-E357.
DOI: https://doi.org/10.1016/S2666-5247(22)00380-9
Project: MedVetKlebs
A framework for the design, implementation, and evaluation of output based surveillance systems against zoonotic threats.
Rivers, S., Kochanowski, M., Stolarek, A., Ziętek-Barszcz, A., Horigan, V., Kent, A.J. & Dewar, R. (2023). Frontiers in Public Health. 11, 1129776.
DOI: https://doi.org/10.3389/fpubh.2023.1129776
Project: MATRIX
Mapping food surveillance chains through different sectors.
Amato, L., Benedetti, G., Di Giuseppe, P., Hénaux, V., Lailler, R., Nordeng, Z., Scharffenberg, T. A. Z., Skjerdal, T. & Cito, F. (2023). Frontiers in Public Health. 11, 1129851.
DOI: https://doi.org/10.3389/fpubh.2023.1129851
Project: MATRIX
Cross-sectional study of hepatitis E virus (HEV) circulation in Italian pig farms.
Ianiro, G., Pavoni, E., Aprea, G., Romantini, R., Alborali, G. L., D’Angelantonio, D., Garofolo, G., Scattolini, S., De Sabato, L., Magistrali, C. F., Burow, E., Ostanello, F., Smith, R. P., Di Bartolo, I. (2023). Frontiers in Veterinary Science. 10, 1136225.
DOI: https://doi.org/10.3389/fvets.2023.1136225
Project: BIOPIGEE
Evidence of structural rearrangements in ESBL-positive pESI(like) megaplasmids of S. Infantis.
Alba, P., Carfora, B., Feltrin, F., Lurescia, M,, Diaconu, E.L., Cordaro, G., Dell’Aira, E., Marani, I., Giacomi, A., Franco, A., Battisti, A. (2023). FEMS Microbiology Letters. 370, fnad014.
DOI: https://doi.org/10.1093/femsle/fnad014
Project: FULL-FORCE
Genomic Epidemiology of Corynebacterium diphtheriae in New Caledonia.
Tessier, E., Hennart, M., Badell, E., Passet, V., Toubiana, J., Biron, A., Gourinat, A. C., Merlet, A., Colot, J., & Brisse, S. (2023). Microbiology spectrum, 11(3), e0461622.
DOI: https://doi.org/10.1128/spectrum.04616-22
Project: Codes4strains
Multidrug-resistant toxigenic Corynebacterium diphtheriae sublineage 453 with two novel resistance genomic islands.
Arcari, G., Hennart, M., Badell, E., & Brisse, S. (2023). Microbial genomics. 9(1), mgen000923.
DOI: https://doi.org/10.1099/mgen.0.000923
Project: Codes4strains
Healthcare-associated foodborne outbreaks in high- income countries: a literature review and surveillance study, 16 OECD countries, 2001 to 2019.
Boone, I., Rosner, B., Lachmann, R., D’Errico, M. L., Iannetti, L., Van der Stede, Y., Boelaert, F., Ethelberg, S., Eckmanns, T., Stark, K., Haller, S., & Wilking, H. (2021). Eurosurveillance. 26, 2001278.
DOI: https://doi.org/10.2807/1560-7917.ES.2021.26.41.2001278
Project: NOVA
Catering of high-risk foods and potential of stored food menu data for timely outbreak investigations in healthcare facilities, Italy and Germany.
Boone, I., D’Errico, M. L., Iannetti, L., Scavia, G., Tozzoli, R., Ethelberg, S., Eckmanns, T., Stark, K., Wilking, H., & Haller, S. (2023). Epidemiology and infection. 151, e61.
DOI: https://doi.org/10.1017/S0950268823000468
Project: NOVA
Corynebacteria of the diphtheriae Species Complex in Companion Animals: Clinical and Microbiological Characterization of 64 Cases from France.
Museux, K., Arcari, G., Rodrigo, G., Hennart, M., Badell, E., Toubiana, J., & Brisse, S. (2023). Microbiology spectrum. e0000623. Advance online publication.
DOI: https://doi.org/10.1128/spectrum.00006-23
Project: Codes4strains
Evaluation of Biofilm Cultivation Models for Efficacy Testing of Disinfectants against Salmonella Typhimurium Biofilms.
Richter, A. M., Konrat, K., Osland, A.M., Brook, E., Oastler, C., Vestby, L.K., Gosling, R.J., Nesse. L.L., Arvand, M. (2023). Microorganisms. 11(3), 761.
DOI: https://doi.org/10.3390/microorganisms11030761
Project: BIOPIGEE
Building an International One Health Strain Level Database to Characterise the Epidemiology of AMR Threats: ESBL—AmpC Producing E. coli as An Example—Challenges and Perspectives.
Perestrelo, S., Amaro, A., Brouwer, M.S.M., Clemente, L., Ribeiro Duarte, A.S., Kaesbohrer, A., Karpíšková, R., Lopez-Chavarrias, V., Morris, D., Prendergast, D., Pista, A., Silveira, L., Skarżyńska, M., Slowey, R., Veldman, K.T., Zając, M., Burgess, C., Alvarez, J. (2023). Antibiotics. 12(3), 552.
DOI: https://doi.org/10.3390/antibiotics12030552
Project: DiSCoVeR
A model using an inter-sectorial data integration process indicates that reducing Campylobacter cross-contamination at slaughter mitigates the risk of human campylobacteriosis effectively.
Foddai, A., Nauta, M., Ellis-Iversen, J. (2023). Microbial Risk Analysis. 23, 100248.
DOI: https://doi.org/10.1016/j.mran.2023.100248
Project: ORION
Prevalence and molecular characterization of Toxoplasma gondii in different types of poultry in Greece, associated risk factors and co-existence with Eimeria spp.
Andreopoulou, M., Schares, G., Koethe, M., Chaligiannis, I.,Maksimov, P., Joeres, M., Cardron, G., Goroll, T., Sotiraki, S., Daugschies, A. & Bangoura, B. (2023). Parasitology Research. 122, 97–111.
DOI: https://doi.org/10.1007/s00436-022-07701-6
Project: TOXOSOURCES
When COVID-19 sits on people’s laps: A systematic review of SARS-CoV-2 infection prevalence in household dogs and cats.
Guo, R., Wolff, C., Prada, J., & Mughini-Gras, L. (2023). One Health. 16, 100497.
DOI: https://doi.org/10.1016/j.onehlt.2023.100497
Project: COVRIN
Evaluation of Non-Invasive Sampling Methods for Detection of Hepatitis E Virus Infected Pigs in Pens.
Meester, M., Rademaker, A., Bouwknegt, M., Hakze-van der Honing, R.W., Stegeman, A., van der Poel, W.H.M. & Tobias, T.J. (2023). Microorganisms. 11(2), 500.
DOI: https://doi.org/10.3390/microorganisms11020500
Project: BIOPIGEE
Rapid culture-independent loop-mediated isothermal amplification detection of antimicrobial resistance markers from environmental water samples.
Hassan, M. M., van Vliet, A. H. M., Higgins, O., Burke, L. P., Chueiri, A., O’Connor, L., Morris, D., Smith, T. J., & La Ragione, R. M. (2023). Microbial biotechnology, 10.1111/1751-7915.14227. Advance online publication.
DOI: https://doi.org/10.1111/1751-7915.14227
Project: WORLDCOM
Inflammatory Responses Induced by the Monophasic Variant of Salmonella Typhimurium in Pigs Play a Role in the High Shedder Phenotype and Fecal Microbiota Composition.
Kempf, F., Cordoni, G., Chaussé, A. M., Drumo, R., Brown, H., Horton, D. L., Paboeuf, F., Denis, M., Velge, P., La Ragione, R., & Kerouanton, A. (2023). mSystems. e0085222. Advance online publication.
DOI: https://doi.org/10.1128/msystems.00852-22
Project: MoMIR-PPC
Evaluating the impact of heavy metals on antimicrobial resistance in the primary food production environment: A scoping review.
Anedda, E., Farrell, M. L., Morris, D., & Burgess, C. M. (2023). Environmental Pollution. 320, 121035.
DOI: https://doi.org/10.1016/j.envpol.2023.121035
Project: HME-AMR
Genotypic and Phenotypic Characterization of Pathogenic Escherichia coli, Salmonella spp., and Campylobacter spp., in Free-Living Birds in Mainland Portugal.
Batista, R., Saraiva, M., Lopes, T., Silveira, L., Coelho, A., Furtado, R., Castro, R., Correia, C. B., Rodrigues, D., Henriques, P., Lóio, S., Soeiro, V., da Costa P. M., Oleastro, M., Pista, A. (2023). International Journal of Environmental Research and Public Health. 20(1), 223.
DOI: https://doi.org/10.3390/ijerph20010223
Project: DiSCoVeR
Clostridioides difficile in South American Camelids in Germany: First Insights into Molecular and Genetic Characteristics and Antimicrobial Resistance.
Dost, I., Abdel-Glil, M., Schmoock, G., Menge, C., Berens, C., González-Santamarina, B., Wiegand, E., Neubauer, H., Schwarz, S., Seyboldt, C. (2023). Antibiotics. 12(1), 86.
DOI: https://doi.org/10.3390/antibiotics12010086
Project: FED-AMR
Mapping the evidence of the effects of environmental factors on the prevalence of antibiotic resistance in the non-built environment: Protocol for a systematic evidence map.
Gardner, B., Betson, M., Cabal Rosel, A., Caniça, M., Chambers, M. A., Contadini, F. M., Gonzalez Villeta, L. C., M. M., La Ragione, R. M., de Menezes, A., Messina, D., Nichols, G., Olivença, D. V., Phalkey, R., Prada, J. M., Ruppitsch, W., Santorelli, L. A., Selemetas, N., Tharmakulasingam, M., van Vliet, A. H. M., Woegerbauer, M., Deza-Cruz, I., Lo Iacono, G. (2023). Environment International. 171, 107707.
DOI: https://doi.org/10.1016/j.envint.2022.107707
Project: FED-AMR
Features of Mycobacterium bovis Complete Genomes Belonging to 5 Different Lineages.
Charles, C., Conde, C., Vorimore, F., Cochard, T., Michelet, L., Boschiroli, M. L., Biet, F. (2023). Microorganisms. 11(1), 177.
DOI: https://doi.org/10.3390/microorganisms11010177
Project: PEMbo
Molecular epidemiology of Clostridioides difficile in companion animals: Genetic overlap with human strains and public health concerns.
Alves, F., Castro, R., Pinto, M., Nunes, A., Pomba, C., Oliveira, M., Silveira, L., Gomes, J. P., Oleastro, M. (2023). Frontiers in Public Health. 10, 1070258.
DOI: https://doi.org/10.3389/fpubh.2022.1070258
Project: FED-AMR
Epizootic Haemorrhagic Disease Virus Serotype 8 in Tunisia, 2021.
Sghaier, S., Sailleau, C., Marcacci, M., Thabet, S., Curini, V., Hassine, T. B., Teodori, L., Portanti, O., Hammami, S., Jurisic, L., Spedicato, M., Postic, L., Gazani, I,, Osman, R. B., Zientara, S., Bréard, E., Calistri, P., Richt, J. A., Holmes, E. C., Savini, G., Di Giallonardo, F., Lorusso, A. (2023). Viruses. 15(1), 16.
DOI: https://doi.org/10.3390/v15010016
Project: TELE-Vir
Aptamer-Based Technologies for Parasite Detection.
Brosseau, N. E., Vallée, I., Mayer-Scholl, A., Ndao, M., Karadjian, G. (2023). Sensors. 23(2), 562.
DOI: https://doi.org/10.3390/s23020562
Project: AptaTrich
Translating One Health knowledge across different institutional and political contexts in Europe.
Humboldt-Dachroeden, S. (2023). One Health Outlook. 5, 1 .
DOI: https://doi.org/10.1186/s42522-022-00074-x
Project: SUSTAIN
Systematic Review and Modelling of Age-Dependent Prevalence of Toxoplasma gondii in Livestock, Wildlife and Felids in Europe.
Dámek, F., Swart, A., Waap, H., Jokelainen, P., Le Roux, D., Deksne, G., Deng, H., Schares, G., Lundén, A., Álvarez-García, G., Betson, M., Davidson, R. K., Györke, A., Antolová, D., Hurníková, Z., Wisselink, H. J., Sroka, J., van der Giessen, J. W. B., Blaga, R., Opsteegh, M. (2023). Pathogens. 12(1), 97.
DOI: https://doi.org/10.3390/pathogens12010097
Project: ToxSauQMRA
2022
Optimized Lambda Exonuclease Digestion or Purification Using Streptavidin-Coated Beads: Which One Is Best for Successful DNA Aptamer Selection?
Le Dortz, L.L., Rouxel, C., Leroy, Q., Brosseau, N., Boulouis, H-J, Haddad, N., Lagrée, A-C., Deshuillers, P.L. (2022). Methods and Protocols. 5(6), 89.
DOI: https://doi.org/10.3390/mps5060089
Project: AptaTrich
Canine brucellosis due to Brucella canis: description of the disease and control measures.
De Massis, F., Sacchini, F., Petrini, A., Bellucci, F., Perilli, M., Garofolo, G., Savini, G., & Tittarelli, M. (2022). Veterinaria Italiana. 58(1), 5–23.
DOI: https://doi.org/10.12834/VetIt.2561.16874.1
Project: IDEMBRU
New genetic biomarkers to differentiate non-pathogenic from clinically relevant Bacillus cereus strains.
Kavanaugh, D. W., Glasset, B., Dervyn, R., Guérin, C., Plancade, S., Herbin, S., Brisabois, A., Nicolas, P., & Ramarao, N. (2022). Clinical microbiology and infection: the official publication of the European Society of Clinical Microbiology and Infectious Diseases. 28(1), 137.e1–137.e8.
DOI: https://doi.org/10.1016/j.cmi.2021.05.035
Project: TOX-detect
Airborne spores’ dissemination of a swine associated Clostridioides difficile clone.
Alves, F., Cano, M., Brondani, G., Nunes, A., & Oleastro, M. (2022). Anaerobe. 78, 102651.
DOI: https://doi.org/10.1016/j.anaerobe.2022.102651
Project: FED-AMR
Multidirectional dynamic model for the spread of extended-spectrum-β-lactamase-producing Escherichia coli in the Netherlands.
de Freitas Costa, E., Hagenaars, T. J., Dame-Korevaar, A., Brouwer, M. S. M. & de Vos, C. J. (2022). Microbial Risk Analysis. 22, 100230.
DOI: https://doi.org/10.1016/j.mran.2022.100230
Project: DiSCoVeR
Sources and trends of human salmonellosis in Europe, 2015–2019: An analysis of outbreak data.
Chanamé Pinedo, L., Mughini-Gras, L., Franz, E., Hald, T., Pires, S. M. (2022). International Journal of Food Microbiology. 379, 109850.
DOI: https://doi.org/10.1016/j.ijfoodmicro.2022.109850
Project: DiSCoVeR
The Heat Is On: Modelling the Persistence of ESBL-Producing E. coli in Blue Mussels under Meal Preparation.
Kausrud, K., Skjerdal, T., Johannessen, G. S., Ilag, H. K., Norström, M. (2022). Foods. 12(1), 14.
DOI: https://doi.org/10.3390%2Ffoods12010014
Project: RaDAR
Estimating the likelihood of ESBL-producing E. coli carriage in slaughter-aged pigs following bacterial introduction onto a farm: A multiscale risk assessment.
McCarthy, C., Viel, A., Gavin, C., Sanders, P., Simons, R. R. L. (2022). Microbial Risk Analysis. 20, 100185.
DOI: https://doi.org/10.1016/j.mran.2021.100185
Project: RaDAR
Transmission routes of antibiotic resistant bacteria: a systematic review.
Godijk, N. G., Bootsma, M. C. J., Bonten, M. J. M. (2022). BMC Infectious Disease. 22(1), 482.
DOI: https://doi.org/10.1186%2Fs12879-022-07360-z
Project: RaDAR
Metagenomic Characterization of Multiple Genetically Modified Bacillus Contaminations in Commercial Microbial Fermentation Products.
D’aes, J., Fraiture, M-A., Bogaerts, B., De Keersmaecker, S. C. J., Roosens, N. H. C. J., Vanneste, K. (2022). Life. 12(12),1971.
DOI: https://doi.org/10.3390/life12121971
Project: FARMED
Improvement of field deployable metagenomics virus detection by a simple pretreatment method.
Fomsgaard, A., Rasmussen, M., Spiess, K., Fomsgaard, A., Graham, B., Fonager, J. (2022). Journal of Clinical Virology Plus. 2(4), 100120.
DOI: https://doi.org/10.1016/j.jcvp.2022.100120
Project: TELE-Vir
Phylogenomic characterization and signs of microevolution in the 2022 multi-country outbreak of monkeypox virus.
Isidro, J., Borges, V., Pinto, M., Sobral, D., Santos, J. D., Nunes, A., Mixão, V., Ferreira, R., Santos, D., Duarte, S., Vieira, L., Borrego, M. J., Núncio, S., Lopes de Carvalho, I., Pelerito, A., Cordeiro, R., Gomes, J. P. (2022). Nature Medicine. 28, 1569–1572.
DOI: https://doi.org/10.1038/s41591-022-01907-y
Project: TELE-Vir
Extensive testing of a multi-locus sequence typing scheme for Giardia duodenalis assemblage A confirms its good discriminatory power.
Klotz, C., Sannella, A.R., Weisz, F., Chaudhry, U., Sroka, J., Tůmová, P., Nohýnková, E., Ignatius, R., Aebischer, T., Betson, M., Troell, K. & Cacciò, S. (2022). Parasites Vectors. 15, 489.
DOI: https://doi.org/10.1186/s13071-022-05615-x
Project: PARADISE
Amplicon-based next-generation sequencing of eukaryotic nuclear ribosomal genes (metabarcoding) for the detection of single-celled parasites in human faecal samples.
Chihi, A., O’Brien Andersen, L., Aoun, K., Bouratbine, A., & Stensvold, C. R. (2022). Parasite epidemiology and control. 17, e00242.
DOI: https://doi.org/10.1016/j.parepi.2022.e00242
Project: PARADISE
Environmental factors associated with the prevalence of ESBL/AmpC-producing Escherichia coli in wild boar (Sus scrofa).
Günther, T., Kramer-Schadt, S., Fuhrmann, M., & Belik, V. (2022). Frontiers in veterinary science. 9, 980554.
DOI: https://doi.org/10.3389/fvets.2022.980554
Project: ORION
One Health Consensus Report Annotation Checklist (OH-CRAC): A cross-sector checklist to support harmonized annotation of surveillance data in reports.
Lopez de Abechuco, E., Dórea, F., Buschhardt, T., Scaccia, N., Günther, T., Foddai, A., Dups-Bergmann, J., & Filter, M. (2022). Zoonoses and public health. 69(6), 606–614.
DOI: https://doi.org/10.1111/zph.12947
Project: ORION
Risk-based control of Campylobacter spp. in broiler farms and slaughtered flocks to mitigate risk of human campylobacteriosis – A One Health approach.
Foddai A., Nauta M. and Ellis-Iversen J. (2022) Microbial Risk Analysis, 100190, ISSN 2352-3522.
DOI: https://doi.org/10.1016/j.mran.2021.100190
Project: ORION
Taking account of genomics in quantitative microbial risk assessment: what methods? what issues?
Guillier, L., Palma, F., Fritsch, L. (2022). Current Opinion in Food Science. 48, 100922.
DOI: https://doi.org/10.1016/j.cofs.2022.100922
Project: CARE
Characterizing Antimicrobial Resistance in Clinically Relevant Bacteria Isolated at the Human/Animal/Environment Interface Using Whole-Genome Sequencing in Austria.
Cabal, A., Rab, G., Daza-Prieto, B., Stöger, A., Peischl, N., Chakeri, A., Mo, S.S., Bock, H., Fuchs, K., Sucher, J., Rathammer, K,, Hasenberger. P,, Stadtbauer. S,, Caniça. M,, Strauß. P,, Allerberger. F,, Wögerbauer. M,, Ruppitsch. W. (2022). International Journal of Molecular Sciences. 23(19), 11276.
DOI: https://doi.org/10.3390/ijms231911276
Project: FED-AMR
Super Shedding in Enteric Pathogens: A Review.
Kempf, F., La Ragione, R., Chirullo, B., Schouler, C., & Velge, P. (2022). Microorganisms. 10(11), 2101.
DOI: https://doi.org/10.3390/microorganisms10112101
Project: MoMIR-PPC
EPI-Net One Health reporting guideline for antimicrobial consumption and resistance surveillance data: a Delphi approach.
Rajendran, N. B., Arieti, F., Mena-Benítez, C. A., Galia, L., Tebon, M., Alvarez, J., Gladstone, B. P., Collineau, L., De Angelis, G., Duro, R., Gaze, W., Göpel, S., Kanj, S. S., Käsbohrer, A., Limmathurotsakul, D., de Abechuco, E. L., Mazzolini, E., Mutters, N., T., Pezzani, M. D., Presterl, E., Renk, H., Rodríguez-Baño, J., Săndulescu, O., Scali, F., Skov, R., Velavan, T. P., Vuong, C., Tacconelli, E., Adegnika, A. A., Avery, L., Bonten, M., Cassini, A., Chauvin, C., Compri, M., Damborg, P., De Greeff, S., Del Toro, M. D., Filter, M., Franklin, A., Gonzalez-Zorn, B., Grave, K., Hocquet, D., Hoelzle, L. E., Kalanxhi, E., Laxminarayan, R., Leibovici, L., Malhotra-Kumar, S., Mendelson, M., Paul, M., Muñoz Madero, C., Murri, R., Piddock, L. J. V., Ruesen, C., Sanguinetti, M., Schilling, T., Schrijver, R., Schwaber, M. J., Scudeller, L., Torumkuney, D., Van Boeckel, T., Vanderhaeghen, W., Voss, A., Wozniak, T. (2022). The Lancet Regional Health – Europe. 2022, 100563.
DOI: https://doi.org/10.1016/j.lanepe.2022.100563.
Associated with WP5: Science to Policy Translation
Sources and trends of human salmonellosis in Europe, 2015–2019: An analysis of outbreak data.
Chanamé Pinedo, L., Mughini Gras, L., Franz, E., Hald, T., Pires, S. (2022). International Journal of Food Microbiology. 379, 109850.
DOI: https://doi.org/10.1016/j.ijfoodmicro.2022.109850
Project: ADONIS
Prioritisation tool for targeting the monitoring of veterinary pharmaceuticals in soils at national level: the case of Spain.
Rodríguez, A., Iglesias, I., de la Torre, A. (2022). European Journal Soil Sciences. 73(4), e13268.
DOI: https://doi.org/10.1111/ejss.13268
Project: MATRIX
A One Health real-time surveillance system for nowcasting Campylobacter gastrointestinal illness outbreaks, Norway, week 30 2010 to week 11 2022.
Swanson, D., Koren, C., Hopp, P., Jonsson, M.E., Rø,G. I., White, R. A., Grøneng, G. M. (2022). Euro Surveillance. 27(43), 2101121.
DOI: https://www.eurosurveillance.org/content/10.2807/1560-7917.ES.2022.27.43.2101121
The spatial distribution of cystic echinococcosis in Italian ruminant farms from routine surveillance data.
Entezami, M., Nocerino, M., Widdicombe, J., Bosco, A., Cringoli, G., Casulli. A., Lo Iacono, G., Rindaldi, L., & Prada, J. M. (2022). Frontiers in Tropical Diseases. 3, 1034572.
DOI: https://doi.org/10.3389/fitd.2022.1034572
Project: MACE
Records of Human Deaths from Echinococcosis in Brazil, 1995–2016.
Lise, M. L. Z., Widdicombe, J., Lise, C. R. Z., de Oliveira S. V., de Caldas E. P., Entezami, M., Prada, J. M., Ghiotti, N., Rodrigues e Silva, R., Vizcaychipi, K. A., Del Rio Vilas, V. (2022). Veterinary Sciences. 9(8), 436.
DOI: https://doi.org/10.3390/vetsci9080436
Project: MACE
The economic evaluation of Cystic echinococcosis control strategies focused on zoonotic hosts: A scoping review.
Widdicombe, J., Basáñez, M. G., Entezami, M., Jackson, D., Larrieu, E. & Prada, J. M. (2022). PLOS Neglected Tropical Diseases. 16(7), e0010568.
DOI: https://doi.org/10.1371/journal.pntd.0010568
Project: MACE
Portable Differential Detection of CTX-M ESBL Gene Variants, blaCTX-M-1 and blaCTX-M-15, from Escherichia coli Isolates and Animal Fecal Samples Using Loop-Primer Endonuclease Cleavage Loop-Mediated Isothermal Amplification.
Higgins, O., Chueiri, A., O’Connor, L., Lahiff, S., Burke, L. P., Morris, D., Pfeifer, N. M., González Santamarina, B., Berens, C., Menge, C., Caniça, M., Manageiro, V., Kisand, V., Hassan, M. M., Gardner, B., van Vliet, A. H. M., La Ragione, R. M., Gonzalez-Zorn, B. & Smith, T. J. (2022). Microbiology Spectrum. e03316-22.
DOI: https://doi.org/10.1128/spectrum.03316-22
Project: WORLDCOM
Harmonisation of in-silico next-generation sequencing based methods for diagnostics and surveillance.
Nunez-Garcia, J., AbuOun, M., Storey, N., Brouwer, M. S., Delgado‑Blas, J. F., Mo, S. S., Ellaby, N., Veldman, K. T., Haenni, M., Châtre, P., Madec, J. Y., Hammerl, J. A., Serna, C., Getino, M., La Ragione, R., Naas, T., Telke, A. A., Glaser, P., Sunde, M., Gonzalez-Zorn, B., Ellington, M. J. & Anjum, M. F. (2022). Scientific Reports. 12, 14372.
DOI: https://doi.org/10.1038/s41598-022-16760-9
Project: ARDIG
Screen the unforeseen: Microbiome profiling for detection of zoonotic pathogens in wild rats.
de Cock, M., Fonville, M., de Vries, A., Bossers, A., van den Bogert, B., Hakze-van der Honing, R., Koets, A., Sprong, H., van der Poel, W., & Maas, M. (2022). Transboundary and Emerging Diseases. 00, 1– 15.
DOI: https://doi.org/10.1111/tbed.14759
Project: DESIRE
A governance and coordination perspective – Sweden’s and Italy’s approaches to implementing One Health.
Humboldt-Dachroeden, Sarah. (2022). SSM- Qualitative Research in Health. 2, 100198.
DOI: https://doi.org/10.1016/j.ssmqr.2022.100198
Associated with WP7: Sustainability & Project SUSTAIN
Comparison and evaluation of analytic and diagnostic performances of four commercial kits for the detection of antibodies against Echinococcus granulosus and multilocularis in human sera.
Peruzzu, A., Mastrandrea, S., Fancellu, A., Bonelli, P., Muehlethaler, K., Masala, G., Santucciu, C. (2022). Comparative Immunology, Microbiology and Infectious Diseases. 86, 101816.
DOI: https://doi.org/10.1016/j.cimid.2022.101816
Project: MEmE
One Health collaboration with and among EU Agencies – Bridging research and policy.
Bronzwaer, S., Catchpole, M., de Coen, W., Dingwall, Z., Fabbri, K., Foltz, C., Ganzleben, C., van Gorcom, R., Humphreys, A., Jokelainen, P., Liebana, E., Rizzi, V., Url, B. (2022). One Health. 15, 100464.
DOI: https://doi.org/10.1016/j.onehlt.2022.100464
Associated with WP5: Science to Policy Translation
Unveiling the incidences and trends of the neglected zoonosis cystic echinococcosis in Europe: a systematic review from the MEmE project.
Casulli A, Abela-Ridder B, Petrone D, Fabiani M, Bobić B, Carmena D, Šoba B, Zerem E, Gargaté MJ, Kuzmanovska G, Calomfirescu C, Rainova I, Sotiraki S, Lungu V, Dezsényi B, Herrador Z, Karamon J, Maksimov P, Oksanen A, Millon L, Sviben M, Shkjezi R, Gjoni V, Akshija I, Saarma U, Torgerson P, Šnábel V, Antolová D, Muhovic D, Besim H, Chereau F, Belhassen García M, Chappuis F, Gloor S, Stoeckle M, Müllhaupt B, Manno V, Santoro A, Santolamazza F. (2022). The Lancet Infectious Diseases. 22 Nov 2022, S1473-3099(22)00638-7.
DOI: https://doi.org/10.1016/S1473-3099(22)00638-7
Project: MEmE
Cystic echinococcosis in northern Tanzania: a pilot study in Maasai livestock-keeping communities.
Tamarozzi, F., Kibona, T., de Glanville, W.A., Mappi. T., Adonikamu, E., Salewi, A., Misso, K., Maro, V., Casulli, A., Santoro, A., Santolamazza, F., Mmbaga, B. T. & Cleaveland, S. (2022). Parasites & Vectors. 15(1), 396.
DOI: https://doi.org/10.1186/s13071-022-05518-x
Project: MEmE
A Broad-Host-Range Plasmid Outbreak: Dynamics of IncL/M Plasmids Transferring Carbapenemase Genes.
Getino, M., López-Díaz, M., Ellaby, N., Clark, J., Ellington, M. J., La Ragione, R. M. (2022). Antibiotics. 11(11), 1641.
DOI: https://doi.org/10.3390/antibiotics11111641
Project: ARDIG
Pathogenic Escherichia coli, Salmonella spp. and Campylobacter spp. in Two Natural Conservation Centers of Wildlife in Portugal: Genotypic and Phenotypic Characterization.
Pista, A., Silveira, L., Ribeiro, S., Fontes, M., Castro, R., Coelho, A., Furtado, R., Lopes, T., Maia, C., Mixão, V., Borges, V., Sá, A., Soeiro, V., Correia, C.B., Gomes, J. P., Saraiva, M., Oleastro, M., Batista, R. (2022). Microorganisms. 10(11), 2132.
DOI: https://doi.org/10.3390/microorganisms10112132
Project: DiSCoVeR, ADONIS, FedAMR, BeONE
Comparative Genomic Analysis of Antimicrobial-Resistant Escherichia coli from South American Camelids in Central Germany.
González-Santamarina, B., Weber, M., Menge, C., Berens, C. (2022). Microorganisms. 10(9), 1697.
DOI: https://doi.org/10.3390/microorganisms10091697
Project: WORLDCOM
Comparison of approaches for source attribution of ESBL-producing Escherichia coli in Germany.
Perestrelo, S., Correia Carreira, G., Valentin, L., Fischer, J., Pfeifer, Y., Werner, G., Schmiedel, J., Falgenhauer, L., Imirzalioglu, C., Chakraborty, T. & Käsbohrer, A. (2022). PLOS ONE. 17(7), e0271317.
DOI: https://doi.org/10.1371/journal.pone.0271317
Project: DiSCoVeR
Global Distribution and Diversity of Prevalent Sewage Water Plasmidomes.
Teudt, F., Otani, S., Aarestrup, F.M. (2022). mSystems. 7(5), e0019122.
DOI: https://doi.org/10.1128/msystems.00191-22
Project: FULL-FORCE
Changing epidemiology of Salmonella Enteritidis human infections in the Netherlands and Belgium, 2006 to 2019: a registry-based population study.
Chanamé Pinedo, L., Franz, E., van den Beld, M., Van Goethem, N., Mattheus, W., Veldman, K., Bosch, T., Mughini-Gras, L., & Pijnacker, R. (2022). Euro Surveillance. 27(38), 2101174.
DOI: https://doi.org/10.2807/1560-7917.ES.2022.27.38.2101174
Project: ADONIS
Detection of an IMI-2 carbapenemase-producing Enterobacter asburiae at a Swedish feed mill.
Börjesson, S., Brouwer, M. S. M., Östlund, E., Eriksson, J., Elving, J., Lindsjö, O. K. and Engblom, L. I. (2022). Frontiers in Microbiology. 13, 993454.
DOI: https://doi.org/10.3389/fmicb.2022.993454
Project: FULL-FORCE
What is a biosecurity measure? A definition proposal for animal production and linked processing operations.
Huber, N., Andraud, M., Sassu, E. L., Prigge, C., Zoche-Golob, V., Käsbohrer, A., DÁngelantonio, D., Vitrop, A., Zmudski, J., Jones, H., Smith, R. P., Tobias, T. & Burrow, E. (2022). One Health. 15, 100433.
DOI: https://doi.org/10.1016/j.onehlt.2022.100433
Project: BIOPIGEE
Genomic Analysis of a mcr-9.1-Harbouring IncHI2-ST1 Plasmid from Enterobacter ludwigii Isolated in Fish Farming.
Manageiro, V., Salgueiro, V., Rosado, T., Bandarra, N. M., Ferreira, E., Smith, T., Dias, E., Caniça, M. (2022). Antibiotics. 11(9), 1232.
DOI: https://doi.org/10.3390/antibiotics11091232
Project: WORLDCOM
Genomic characterization of multidrug-resistant Salmonella serovar Kentucky ST198 isolated in poultry flocks in Spain (2011-2017).
Samper-Cativiela, C., Diéguez-Roda, B., Trigo da Roza, F., Ugarte-Ruiz, M., Elnekave, E., Lim, S., Hernández, M., Abad, D., Collado, S., Sáez, J. L., de Frutos, C., Agüero, M., Moreno, M. Á., Escudero, J. A., & Álvarez, J. (2022). Microbial genomics. 8(3), 000773.
DOI: https://doi.org/10.5281/zenodo.7082555
Project: ADONIS
Succession in the caecal microbiota of developing broilers colonised by extended-spectrum β-lactamase-producing Escherichia coli.
Cárdenas-Rey, I., Bello Gonzalez, T.d.J., van der Goot, J., Ceccarelli, D., Bouwhuis, G., Schillemans, D., Jurburg, S., Veldman, K., De Visser, A., and Brouwer, M. (2022) Animal Microbiome 4, 51.
DOI: https://doi.org/10.1186/s425
Project: VIMOGUT
An outbreak of cryptosporidiosis associated with drinking water in north-eastern Italy, August 2019: microbiological and environmental investigations
Franceschelli, A., Bonadonna, L., Cacciò, S. M., Sannella, A., R., Cintori C., Gargiulo R., Coccia A. M., Paradiso R., Iaconelli M., Briancesco R. and Tripodi A. (2022) Euro Surveillance. 27(35).
DOI : https://doi.org/10.2807/1560-7917.ES.2022.27.35.2200038
Project: PARADISE
Use of genomics to explore AMR persistence in an outdoor pig farm with low antimicrobial usage.
Storey, N., Cawthraw, S., Turner, O., Rambaldi, M., Lemma, F., Horton, R., Randall, L., Duggett, N. A., AbuOun, M., Martelli, F., & Anjum, M. F. (2022). Microbial genomics. 8(3), 000782.
DOI: https://doi.org/10.1099/mgen.0.000782
Project: ARDIG
Search term “One Health” remains of limited use to identify relevant scientific publications: Denmark as a case study.
Benedetti, G., Jokelainen, P., & Ethelberg, S. (2022). Frontiers in Public Health. 10, 938460.
DOI: https://doi.org/10.3389/fpubh.2022.938460
A European-wide dataset to uncover adaptive traits of Listeria monocytogenes to diverse ecological niches.
Félix, B., Sevellec, Y., Palma, F. et al. (2022). Science Data. 9, 190.
DOI: https://doi.org/10.1038/s41597-022-01278-6
Project: LISTADAPT
FepR as a central genetic target in quaternary
ammonium compounds (QAC)-adaptive process and cross-resistance to ciprofloxacin in Listeria monocytogenes.
Douarre, P. E., Sévellec, Y., Le Grandois, P., Soumet, C., Bridier, A., Roussel, S. (2022). Frontiers in Microbiology. 13, 864576.
DOI: https://doi.org/10.3389/fmicb.2022.864576
Project: LISTADAPT
Listeria monocytogenes: Investigation of fitness in soil does not support the relevance of ecotypes.
Sévellec, Y., Ascencio, E., Douarre, P. E., Félix, B., Gal, L., Garmyn, D., Guillier, L., Piveteau, P., Roussel, S. (2022). Frontiers in Microbiology. 13, 917588.
DOI: https://doi.org/10.3389/fmicb.2022.917588
Project: LISTADAPT
Genomics elements located in the accessory repertoire drive the adaptation to biocides in Listeria monocytogenes strains from different ecological niches.
Palma, F., Radomski, N., Guérin, A., Sévellec, Y., Félix, B., Bridier, A., Soumet, C., Roussel, S., Guillier, L. (2022). Food Microbiology. 106, 103757.
DOI: https://doi.org/10.1016/j.fm.2021.103757
Project: LISTADAPT
Assessment of the Transmission Dynamics of Clostridioides difficile in a Farm Environment Reveals the Presence of a New Toxigenic Strain Connected to Swine Production.
Alves, F., Nunes, A., Castro, R., Sequeira, A., Moreira, O., Matias, R., Rodrigues, J. C., Silveira, L., Gomes, J. P., & Oleastro, M. (2022). Frontiers in Microbiology. 13, 858310.
DOI: https://doi.org/10.3389/fmicb.2022.858310
Project: FED-AMR
A Dual Barcoding Approach to Bacterial Strain Nomenclature: Genomic Taxonomy of Klebsiella pneumoniae Strains.
Hennart, M., GuED-AMRglielmini, J., Bridel, S., Maiden, M. C. J., Jolley, K. A., Criscuolo, A., Brisse, S. (2022). Molecular Biology and Evolution. 39 (7), msac135.
DOI: https://doi.org/10.1093/molbev/msac135
Project: Codes4strains
The Retrospective on Atypical Brucella Species Leads to Novel Definitions.
Occhialini, A., Hofreuter, D., Ufermann, C. M., Al Dahouk, S., & Köhler, S. (2022). Microorganisms. 10(4), 813.
DOI: https://doi.org/10.3390/microorganisms10040813
Project: IDEMBRU
IS6110 Copy Number in Multi-Host Mycobacterium bovis Strains Circulating in Bovine Tuberculosis Endemic French Regions.
Charles, C., Conde, C., Biet, F., Boschiroli, M-L. & Michelet, L. (2022). Frontiers in Microbiology. 9, 891902.
DOI: https://doi.org/10.3389/fmicb.2022.891902
Project: PEMbo
Remarkable genomic diversity among Escherichia isolates recovered from healthy chickens.
Thomson, N. M., Gilroy, R., Getino, M., Foster-Nyarko, E., van Vliet, A. H. M., La Ragione, R. M. & Pallen, M. J. (2022). Peer J. 10, e12935.
DOI: https://doi.org/10.7717/peerj.12935
Antibiotic Resistance in Campylobacter spp. Isolated from Broiler Chicken Meat and Human Patients in Estonia.
Tedersoo, T., Roasto, M., Mäesaar, M., Häkkinen, L., Kisand, K., Ivanova, M., Valli, M. H., & Meremäe, K. (2022). Microorganisms. 10(5), 1067.
DOI: https://doi.org/10.3390/microorganisms10051067
Project: WORLDCOM
Survey on shedding of selected pathogenic, zoonotic or antimicrobial resistant bacteria by South American camelids in Central Germany.
González-Santamarina, B., Schnee, C., Koehler, H., Weber, M., Methner, U., Seyboldt, C., Berens, C. & Menge, C. (2022). Berliner Und Münchener Tierärztliche Wochenschrift. 135, 1–16.
DOI: https://doi.org/10.2376/1439-0299-2021-21
Project: WORLDCOM
The prevalence, counts, and MLST genotypes of Campylobacter in poultry meat and genomic comparison with clinical isolates.
Tedersoo, T., Roasto, M., Mäesaar, M., Kisand, V., Ivanova, M., Meremäe, M. (2022). Poultry Science. 101(4), 101703.
DOI: https://doi.org/10.1016/j.psj.2022.101703
Project: WORLDCOM
Clonal and plasmid-mediated flow of ESBL/AmpC genes in Escherichia coli in a commercial laying hen farm.
Aldea, I., Gibello, A., Hernández, M., & Moreno, M.A. (2022). Veterinary Microbiology. 270, 109453.
DOI: https://doi.org/10.1016/j.vetmic.2022.109453
Project: ECO-HEN
JMM profile: Loop-mediated isothermal amplification (LAMP): for the rapid detection of nucleic acid targets in resource-limited settings.
Hassan, M. M., Grist, L. F., Poirier, A. C., & La Ragione, R. M. (2022). Journal of medical microbiology. 71(5), 001522.
DOI: https://doi.org/10.1099/jmm.0.001522
Project: WORLDCOM
Dissemination Routes of Carbapenem and Pan-Aminoglycoside Resistance Mechanisms in Hospital and Urban Wastewater Canalizations of Ghana.
Delgado-Blas, J. F., Valenzuela Agüi, C., Marin Rodriguez, E., Serna, C., Montero, N., Saba, C., & Gonzalez-Zorn, B. (2022). mSystems. 7(1), e0101921.
DOI: https://doi.org/10.1128/msystems.01019-21
Project: WORLDCOM
Genomic Screening of Antimicrobial Resistance Markers in UK and US Campylobacter Isolates Highlights Stability of Resistance over an 18-Year Period.
van Vliet, A., Thakur, S., Prada, J. M., Mehat, J. W., & La Ragione, R. M. (2022). Antimicrobial agents and chemotherapy. 66(5), e0168721.
DOI: https://doi.org/10.1128/aac.01687-21
Project: WORLDCOM
Species and genotypes belonging to Echinococcus granulosus sensu lato complex causing human cystic echinococcosis in Europe (2000–2021): a systematic review.
Casulli, A., Massolo, A., Saarma, U., Umhang, G., Santolamazza, F., Santoro, A. (2022). Parasites Vectors. 15, 109.
DOI: https://doi.org/10.1186/s13071-022-05197-8
Project: MEmE
Chromosome-scale Echinococcus granulosus (genotype G1) genome reveals the Eg95 gene family and conservation of the EG95-vaccine molecule.
Korhonen, P.K., Kinkar, L., Young, N.D. et al. (2022). Communications Biology. 5, 199.
DOI: https://doi.org/10.1038/s42003-022-03125-1
Project: MEmE
Insights into Human Cystic Echinococcosis in the Kurdistan Region, Iraq: Characteristics and Molecular Identification of Cysts.
Issa, A.R., Arif, S. H., Mohammed, A. A., Santolamazza, F., Santoro, A., Mero, W.M.S., Casulli, A. (2022). Pathogens. 11(4), 408.
DOI: https://doi.org/10.3390/pathogens11040408
Project: MEmE
SARS-CoV-2 in a Mink Farm in Italy: Case Description, Molecular and Serological Diagnosis by Comparing Different Tests.
Moreno, A., Lelli, D., Trogu, T., Lavazza, A., Barbieri, I., Boniotti, M., Pezzoni, G., Salogni, C., Giovannini, S., Alborali, G., Bellini, S., Boldini, M., Farioli, M., Ruocco, L., Bessi, O., Maroni Ponti, A., Di Bartolo, I., De Sabato, L., Vaccari, G., Belli, G., Margutti, A., Giorgi, M. (2022). Viruses. 14(8), 1738.
DOI: https://doi.org/10.3390/v14081738
Project: COVRIN
Neutralising antibody activity against SARS-CoV-2 variants, including Omicron, in an elderly cohort vaccinated with BNT162b2.
Newman, J., Thakur, N., Peacock, T.P., Bialy, D., Elreafey, A.M., Bogaardt, C., Horton, D.L., Ho, S., Kankeyan, T., Carr, C., Hoschler, K., Barclay, W.S., Amirthalingam, G., Brown, K., Charleston, B., Bailey, D. (2022). Nature Microbiology. 7, 1180–1188.
DOI: https://doi.org/10.1038/s41564-022-01163-3
Project: COVRIN
SARS-CoV-2 in pets of infected family groups in a severely affected region in Spain.
Mendez, A., Jiménez-Clavero, M.A., Calvo, C., Pérez-Ramírez, E., Fernández-Pinero, J., Llorente, F., Sainz, T., Aguilera-Sepúlveda, P., Alcolea, S., Escolano, L., Cano, C., Novoa, I., De la Torre, A. & Iglesias, I. (2022). International Journal of Infectious Diseases. 116, Supplement, S25.
DOI: https://doi.org/10.1016/j.ijid.2021.12.059
Project: COVRIN
Multicentre evaluation of a selective isolation protocol for detection of mcr-positive E. coli and Salmonella spp. in food-producing animals and meat.
Perrin-Guyomard, A., Granier, S.A., Slettemeås, J.S., Anjum, M., Randall, L., AbuOun, M., Pauly, N., Irrgang, A., Hammerl, J.A., Kjeldgaard, J.S., Hammerum, A., Franco, A., Skarżyńska, M., Kamińska, E., Wasyl, D., Dierikx, C., Börjesson, S., Geurts, Y., Haenni, M. and Veldman, K. (2022). Letters in Applied Microbiology. Early view.
DOI: https://doi.org/10.1111/lam.13717
Project: IMPART
Characterization of Atypical Shiga Toxin Gene Sequences and Description of Stx2j, a New Subtype.
Gill, A., Dussault, F., McMahon, T., Petronella, N., Wang, X., Cebelinski, E., Scheutz, F., Weedmark, K., Blais, B., & Carrillo, C. (2022). Journal of Clinical Microbiology. 60(3), e0222921.
DOI: https://doi.org/10.1128/jcm.02229-21
Project: OH-HARMONY-CAP
Complex network analysis to understand trading partnership in French swine production.
Hammami, P., Widgren, S., Grosbois, V., Apolloni, A., Rose, N., Matthieu, A. (2022). PLOS ONE. 17(4), e0266457.
DOI: https://doi.org/10.1371/journal.pone.0266457
Project: BIOPIGEE
Assessing Campylobacter cross-contamination of Danish broiler flocks at slaughterhouses considering true flock prevalence estimates and ad-hoc sampling.
Foddai, A., Takeuchi-Storm, N., Høg, B. B., Kjeldgaard, J. S., Andersen, J. K., Ellis-Iversen, J. (2022). Microbial Risk Analysis. 21, 100214.
DOI: https://doi.org/10.1016/j.mran.2022.100214
Project: ORION
A Longitudinal Survey of Antibiotic-Resistant Enterobacterales in the Irish Environment, 2019-2020.
Hooban, B., Fitzhenry, K., O’Connor, L., Miliotis, G., Joyce, A., Chueiri, A., Farrell, M. L., DeLappe, N., Tuohy, A., Cormican, M., & Morris, D. (2022). The Science of the total environment. 828, 154488. Advance online publication.
DOI: https://doi.org/10.1016/j.scitotenv.2022.154488
Project: MedVetKlebs
Genomic evolution of the globally disseminated multidrug-resistant Klebsiella pneumoniae clonal group 147.
Rodrigues, C., Desai, S., Passet, V., Gajjar, D., & Brisse, S. (2022). Microbial genomics. 8(1), 000737.
DOI: https://doi.org/10.1099/mgen.0.000737
Project: MedVetKlebs
A statistical modelling approach for source attribution meta-analysis of sporadic infection with foodborne pathogens.
, , , , , , & (2022). Zoonoses and Public Health. 00, 1– 12.
DOI: https://doi.org/10.1111/zph.12937
Project: DiSCoVeR
Comparative performance of five recombinant and chimeric antigens in a time-resolved fluorescence immunoassay for detection of Toxoplasma gondii infection in cats.
Huertas-López, A., Contreras Rojo, M., Sukhumavasi, W., Martínez-Subiela, S., Álvarez-García, G., López-Ureña, N. M., Cerón, J. J., & Martínez-Carrasco, C. (2022). Veterinary Parasitology. 304, 109703.
DOI: https://doi.org/10.1016/j.vetpar.2022.109703
Project: TOXOSOURCES
Unifying Virulence Evaluation in Toxoplasma gondii: A Timely Task.
Calero-Bernal, R., Fernández-Escobar, M., Katzer, F., Su, C., & Ortega-Mora, L. M. (2022). Frontiers in cellular and infection microbiology. 12, 868727.
DOI: https://doi.org/10.3389/fcimb.2022.868727
Project: TOXOSOURCES
Toxoplasma gondii Genotyping: A Closer Look Into Europe.
Fernández-Escobar, M., Schares, G., Maksimov, P., Joeres, M., Ortega-Mora, L. M., & Calero-Bernal, R. (2022). Frontiers in cellular and infection microbiology. 12, 842595.
DOI: https://doi.org/10.3389/fcimb.2022.842595
Project: TOXOSOURCES
Detection of anti-Neospora caninum antibodies in sheep’s full-cream milk by a time-resolved fluorescence immunoassay.
Huertas-López, A., Sánchez-Sánchez, R., Diezma-Díaz, C., Álvarez-García, G., Martínez-Carrasco, C., Martínez-Subiela, S. & Cerón, J. J. (2022). Veterinary Parasitology. 301, 109641.
DOI: https://doi.org/10.1016/j.vetpar.2021.109641
Project: TOXOSOURCES
Toxoplasma gondii Genetic Diversity in Mediterranean Dolphins.
Fernández-Escobar, M., Giorda, F., Mattioda, V., Audino, T., Di Nocera, F., Lucifora, G., Varello, K., Grattarola, C., Ortega-Mora, L.M., Casalone, C., Calero-Bernal, R. (2022). Pathogens. 2022. 11(8), 909.
DOI: https://doi.org/10.3390/pathogens11080909
Project: TOXOSOURCES
Contamination of Soil, Water, Fresh Produce, and Bivalve Phylogenomic characterization and signs of microevolution in the 2022 multi-country outbreak of monkeypox virus.
Isidro, J., Borges, V., Pinto, M., Sobral, D., Santos, J. D., Nunes, A., Mixão, V., Ferreira, R., Santos, D., Duarte, S., Vieira, L., Borrego, M. J., Núncio, S., de Carvalho, I. L., Pelerito, A., Cordeiro, R., & Gomes, J. P. (2022). Nature medicine. 28(8), 1569–1572.
DOI: https://doi.org/10.1038/s41591-022-01907-y
Project: TOXOSOURCES
Mollusks with Toxoplasma gondii Oocysts: A Systematic Review.
López Ureña, N. M., Chaudhry, U., Calero Bernal, R., Cano Alsua, S., Messina, D., Evangelista, F., Betson, M., Lalle, M., Jokelainen, P., Ortega Mora, L.M., Álvarez García, G. (2022). Microorganisms. 10(3), 517.
DOI: https://doi.org/10.3390/microorganisms10030517
Project: TOXOSOURCES
Veterinarians as a Risk Group for Zoonoses: Exposure, Knowledge and Protective Practices in Finland.
Kinnunen, P. M., Matomäki, A., Verkola, M., Heikinheimo, A., Vapalahti, O., Kallio-Kokko, H., Virtala, A. M., & Jokelainen, P. (2022). Safety and health at work. 13(1), 78–85.
DOI: https://doi.org/10.1016/j.shaw.2021.10.008
Project: TOXOSOURCES
Participation in One Health Networks and Involvement in the COVID-19 Pandemic Response: A Global Study.
Streichert, L. C., Sepe, L. P., Jokelainen, P., Stroud, C. M., Berezowski, J., & Del Rio Vilas, V. J. (2022). Frontiers in Public Health. 126.
DOI: https://doi.org/10.3389/fpubh.2022.830893
High Prevalence of Klebsiella pneumoniae in European Food Products: a Multicentric Study Comparing Culture and Molecular Detection Methods.
Rodrigues, C., Hauser, K., Cahill, N., Ligowska-Marzęta, M., Centorotola, G., Cornacchia, A., Garcia Fierro, R., Haenni, M., Nielsen, E. M., Piveteau, P., Barbier, E., Morris, D., Pomilio, F., & Brisse, S. (2022). Microbiology spectrum. 10(1), e0237621.
DOI: https://doi.org/10.1128/spectrum.02376-21
Project: MedVetKlebs
Retrospective Cohort Study on Human Cystic Echinococcosis in Khyber Pakhtunkhwa Province (Pakistan) Based on 16 Years of Hospital Discharge Records.
Khan, H., Casulli, A., Harandi, M.F., Afzal, M.S., Saqib, M.A.N., Ahmed, H. A (2022). Pathogens. 11, 194.
DOI: https://doi.org/10.3390/pathogens11020194
Project: MEmE
A European multicenter evaluation study to investigate the performance on commercially available selective agar plates for the detection of carbapenemase producing Enterobacteriaceae.
Dierikx C., Börjesson S., Perrin-Guyomard A., Haenni M., Norström M., Divon H. H., Ilag H. K., Granier S. A., Hammerum A., Sejer Kjeldgaard J., Pauly N., Randall L., Anjum M. F., Smialowska A., Franco A., Veldman K., Schau Slettemeås J. (2022) Journal of Microbiological Methods. 193, 106418
DOI: https://doi.org/10.1016/j.mimet.2022.106418
Project: IMPART
2021
List of OHEJP Publications 2021
DOI: https://doi.org/10.5281/zenodo.6511418
Colistin resistance genes mcr-1 to mcr-5, including a case of triple occurrence (mcr-1, -3 and -5), in Escherichia coli isolates from faeces of healthy pigs, cattle and poultry in Belgium, 2012-2016.
Timmermans, M., Wattiau, P., Denis, O., & Boland, C. (2021). International journal of antimicrobial agents. 57(6), 106350.
DOI: https://doi.org/10.1016/j.ijantimicag.2021.106350
Project: LIN-RES
First Isolation of Brucella canis from a breeding kennel in Italy.
De Massis, F., Sacchini, F., Averaimo, D., Garofolo, G., Lecchini, P., Ruocco, L., Lomolino, R., Santucci, U., Sgariglia, E., Crotti, S., Petrini, A., Migliorati, G., D’Alterio, N., Gavaudan, S., & Tittarelli, M. (2021). Veterinaria Italiana. 57(3).
DOI: https://doi.org/10.12834/VetIt.2497.15848.1
Project: IDEMBRU
DiagnoTop: A Computational Pipeline for Discriminating Bacterial Pathogens without Database Search.
Borges Lima, D., Dupré, M., Mariano Santos, M. D., Carvalho, P. C., & Chamot-Rooke, J. (2021). Journal of the American Society for Mass Spectrometry. 32(6), 1295–1299.
DOI: https://doi.org/10.1021/jasms.1c00014
Project: TOX-Detect
The Use of Flocked Swabs with a Protective Medium Increases the Recovery of Live Brucella spp. and DNA Detection.
Freddi, L., Djokic, V., Petot-Bottin, F., Girault, G., Perrot, L., Ferreira Vicente, A., & Ponsart, C. (2021). Microbiology spectrum. 9(3), e0072821.
DOI: https://doi.org/10.1128/Spectrum.00728-21
Project: IDEMBRU
Identification of a blaVIM-1-Carrying IncA/C2 Multiresistance Plasmid in an Escherichia coli Isolate Recovered from the German Food Chain.
Pauly, N., Hammerl, J. A., Grobbel, M., Käsbohrer, A., Tenhagen, B-A., Malorny, B., Schwarz, S., Meemken, D., Irrgang, A. (2021). Microorganisms. 9(1), 29.
DOI: https://doi.org/10.3390/microorganisms9010029
Project: IMPART
Comparative Analysis of Genetic Determinants Encoding Cadmium, Arsenic, and Benzalkonium Chloride Resistance in Listeria monocytogenes of Human, Food, and Environmental Origin
Gelbicova, T., Florianova, M., Hluchanova, L., Kalova, A., Korena, K., Strakova, N., Karpiskova, R. (2021). Frontiers in Microbiology. 11, 599882.
DOI: https://doi.org/10.3389/fmicb.2020.599882
Project: LISTADAPT
The SARS-CoV-2 Reproduction Number R0 in Cats.
Gonzales, J. L., de Jong, M. C. M., Gerhards, N. M., & Van der Poel, W. H. M. (2021). Viruses, 13 (12), 2480.
DOI: https://doi.org/10.3390/v13122480
An FSKX compliant source attribution model for salmonellosis and a look at its major hidden pitfalls.
Sundermann, E. M., Correia Carreira, G., Käsbohrer, A. (2021). Food Modelling Journal. 2, e70008.
DOI: https://doi.org/10.3897/fmj.2.70008
Project: MATRIX
Genomic Epidemiology and Strain Taxonomy of Corynebacterium diphtheriae.
Guglielmini, J., Hennart, M., Badell, E., Toubiana, J., Criscuolo, A., & Brisse, S. (2021). Journal of clinical microbiology. 59(12), e0158121.
DOI: https://doi.org/10.1128/JCM.01581-21
Project: Codes4strains
Impact of the COVID-19 pandemic on human salmonellosis in the Netherlands.
Mughini-Gras, L., Chanamé Pinedo, L., Pijnacker, R., Van den Beld, M., Wit, B., Veldman, K., Bosch, T., Franz, E. (2021). Epidemiology and Infection, 149, E254.
DOI: https://doi.org/10.1017/S0950268821002557
Project: ADONIS
Impact of animal saliva on the performance of rapid antigen tests for detection of SARS-CoV-2 (wildtype and variants B.1.1.7 and B.1.351).
Hagag, I. T., Weber, S., Sadeghi, B., Groschup, M. H., & Keller, M. (2021). Veterinary microbiology, 262, 109243.
DOI: https://doi.org/10.1016/j.vetmic.2021.109243
Project: COVRIN
Characterization of Clinical Escherichia coli Strains Producing a Novel Shiga Toxin 2 Subtype in Sweden and Denmark.
Bai, X., Scheutz, F., Dahlgren, H. M., Hedenström, I., & Jernberg, C. (2021). Microorganisms. 9(11), 2374.
DOI: https://doi.org/10.3390/microorganisms9112374
Project: OH-HARMONY-CAP
Coverage of the national surveillance system for human Salmonella infections, Belgium, 2016-2020.
Van Goethem N., Van Den Bossche A., Ceyssens P. J., Lajot A., Coucke W., Vernelen K., Roosens N. H. C., De Keersmaecker S. C. J., Van Cauteren D., Mattheus W. (2021) PLoS ONE 16(8): e0256820.
DOI: https://doi.org/10.1371/journal.pone.0256820
Project: ADONIS
Myocardial Injury Complicated by Systolic Dysfunction in a COVID-19-Positive Dog.
Romito G., Bertaglia T., Bertaglia L., Decaro N., Uva A., Rugna G., Moreno A., Vincifori G., Dondi F., Diana A., Cipone M. (2021) Animals. 11(12):3506.
DOI: https://doi.org/10.3390/ani11123506
Project: COVRIN
Long-term persistence of neutralizing SARS-CoV-2 antibodies in pets.
Decaro, N., Grassi, A., Lorusso, E., Patterson, E. I., Lorusso, A., Desario, C., Anderson, E. R., Vasinioti, V., Wastika, C. E., Hughes, G. L., Valleriani, F., Colitti, B., Ricci, D., Buonavoglia, D., Rosati, S., Cavaliere, N., Paltrinieri, S., Lauzi, S., Elia, G., & Buonavoglia, C. (2021). Transboundary and emerging diseases. 1-4.
DOI: https://doi.org/10.1111/tbed.14308
Project: COVRIN
Identification of Oocyst-Driven Toxoplasma gondii Infections in Humans and Animals through Stage-Specific Serology—Current Status and Future Perspectives.
Álvarez García G., Davidson R., Jokelainen P., Klevar S., Spano F., Seeber F. (2021) Microorganisms. 9(11):2346.
DOI: https://doi.org/10.3390/microorganisms9112346
Project: TOXOSOURCES
Differential susceptibility of SARS-CoV-2 in animals: Evidence of ACE2 host receptor distribution in companion animals, livestock and wildlife by immunohistochemical characterisation.
, , , , , , , , , , , , , , , , , (2021). Transboundary and Emerging Diseases, 1–12.
DOI: https://doi.org/10.1111/tbed.14232
Project: COVRIN
Changes in serum biomarkers of inflammation in bovine besnoitiosis.
González-Barrio, D., Huertas-López, A., Diezma-Díaz, C., Ferre I., Cerón J. J., Ortega-Mora L. M. Álvarez-García G. (2021) Parasites Vectors 14, 488.
DOI: https://doi.org/10.1186/s13071-021-04991-0
Project: TOXOSOURCES
Identification of molecular biomarkers associated with disease progression in the testis of bulls infected with Besnoitia besnoiti.
González-Barrio D., Diezma-Díaz C., Gutiérrez-Expósito D., Tabanera E., Jiménez-Meléndez A., Pizarro M., González-Huecas M., Ferre I., Ortega-Mora L. M., Álvarez-García G. (2021) Vet Res 52,106.
DOI: https://doi.org/10.1186/s13567-021-00974-2
Project: TOXOSOURCES
Molecular survey of Besnoitia spp. (Apicomplexa) in faeces from European wild mesocarnivores in Spain.
González-Barrio D., Köster P.C., Habela M.A., Martín-Pérez M., Fernández-García J.L., Balseiro A., Barral M., Nájera F., Figueiredo A.M., Palacios M.J., Mateo M., Carmena D., Álvarez-García G., Calero-Bernal R. (2021). Transboundary and Emerging Diseases, 68, 3156– 3166.
DOI: https://doi.org/10.1111/tbed.14206.
Project: TOXOSOURCES
Seroprevalence of Toxoplasma gondii in outdoor dogs and cats in Bangkok, Thailand.
Huertas-López A., Sukhumavasi W., Álvarez-García G., Martínez-Subiela S., Cano-Terriza D., Almería S., Dubey J.P., García-Bocanegra I., Cerón J.J., Martínez-Carrasco C. (2021). Parasitology, 148(7), 843-849. DOI: 10.1017/S0031182021000421
Project: TOXOSOURCES
Development and validation of a time-resolved fluorescence immunoassay for the detection of anti-Toxoplasma gondii antibodies in goats.
Huertas-López A., Martínez-Subiela S., Cerón J.J., Vázquez-Calvo Á., Pazmiño-Bonilla E.D., López-Ureña N.M., Martínez-Carrasco C., Álvarez-García G. (2021) Veterinary Parasitology 293, 109432.
DOI: https://doi.org/10.1016/j.vetpar.2021.109432.
Project: TOXOSOURCES
Draft Genome Sequence of a Multidrug-Resistant Escherichia coli Sequence Type 1193 Pandemic Clone Isolated from Wastewater in Austria
Cabal A., Peischl N., Rab G., Stöger A., Springer B., Sucher J., Allerberger F. and Ruppitsch W. (2021) Microbiol Resour Announc 10:e00762-21.
DOI: https://doi.org/10.1128/MRA.00762-21
Project: FED-AMR
A large panel of chicken cells are invaded in vivo by Salmonella Typhimurium even when depleted of all known invasion factors.
Roche S. M., Holbert S., Le Vern Y., Rossignol C., Rossignol A., Velge P. and Virlogeux-Payant I. (2021) Open Biology. 11, 210117
DOI: https://doi.org/10.1098/rsob.210117
Project: MoMIR-PPC
Large diversity of linezolid-resistant isolates discovered in food-producing animals through linezolid selective monitoring in Belgium in 2019.
Timmermans M, Bogaerts B, Vanneste K, De Keersmaecker S C J, Roosens N H C, Kowalewicz C, Simon G, Argudín M A, Deplano A, Hallin M, Wattiau P, Fretin D, Denis O and Boland C. (2021) Journal of Antimicrobial Chemotherapy, dkab376.
DOI: https://doi.org/10.1093/jac/dkab376
Project: LIN-RES
SARS-CoV-2 surveillance in Italy through phylogenomic inferences based on Hamming distances derived from pan-SNPs, -MNPs and -InDels.
Di Pasquale A, Radomski N, Mangone I, Calistri P, Lorusso A and Cammà C. (2021). BMC Genomics. 22, 782.
DOI: https://doi.org/10.1186/s12864-021-08112-0
Project: COVRIN
Morphological Characteristics of Alveolar and Cystic Echinococcosis Lesions in Human Liver and Bone.
Barth, TFE, Casulli, A (2021). Pathogens, 10, 1326.
DOI: https://doi.org/10.3390/pathogens10101326
Project: MEME
Peek into the Plasmidome of Global Sewage.
Kirstahler, P., Teudt, F., Otani, S., Aarestrup, FM, Pamp, SJ., (2021). mSystems. 6:e00283-21.
DOI: https://doi.org/10.1128/mSystems.00283-21
Project: FULL-FORCE
The disease burden of ocular toxoplasmosis in Denmark in 2019: Estimates based on laboratory testing of ocular samples and on publicly available register data.
Marstrand, J., Kurtzhals, JAL., Fuchs, HJ., Nielsen, HV., Jokelainen, P. (2021). Parasite Epidemiology and Control. 15, e00229.
DOI: https://doi.org/10.1016/j.parepi.2021.e00229
Project: TOXOSOURCES
Population genomics and antimicrobial resistance dynamics of Escherichia coli in wastewater and river environments.
Delgado-Blas, JF., Ovejero, CM., David, S., Montero, N., Calero-Caceres, W., Garcillan-Barcia, MP., de la Cruz, F., Muniesa, M., Aanensen, DM., Gonzalez-Zorn, B. (2021). Communications Biology. 4, 457.
DOI: https://doi.org/10.1038/s42003-021-01949-x
Project: WORLDCOM
The cytotoxic potential of Bacillus cereus strains of various origins.
Glasset, B., Sperry, M., Dervyn, R., Herbin, S., Brisabois, A., Ramarao, N. (2021). Food Microbiology. 98, 103759.
DOI: https://doi.org/10.1016/j.fm.2021.103759
Project: TOX-detect
A longitudinal study of Toxoplasma gondii seroconversion on four large Danish sow farms.
Olsen, A., Denwood, M., Houe, H., Birk Jensen, T., Nielsen, HV. (2021). Veterinary Parasitology. 295, 109460.
DOI: https://doi.org/10.1016/j.vetpar.2021.109460
Project: TOXOSOURCES
Zoonotic pathogens in wild muskoxen (Ovibos moschatus) and domestic sheep (Ovis aries) from Greenland.
Berg, RPKD., Stensvold, CR., Jokelainen, P., Grønlund, AK., Nielsen, HV., Kutz, S., Kapel CMO. (2021). Veterinary Medicine and Science. 1-14.
DOI: https://doi.org/10.1002/vms3.599
Project: TOXOSOURCES
Comparison of Direct and Indirect Toxoplasma gondii Detection and Genotyping in Game:Relationship and Challenges.
Stollberg, K.C., Schares, G., Mayer-Scholl, A., Hrushetska, I., Diescher, S., Johne, A., Richter, M.H., Bier, N.S. (2021). Microorganisms, 9, 1663.
DOI: https://doi.org/10.3390/microorganisms9081663
Project: TOXOSOURCES
Attention to the Tripartite’s one health measures in national action plans on antimicrobial resistance.
Munkholm, L., Rubin, O., Bækkeskov, E., & Humboldt-Dachroeden, S. (2021). Journal of public health policy. 42(2), 236–248.
DOI: https://doi.org/10.1057/s41271-021-00277-y
Project: SUSTAIN
Draft genome sequences of two Listeria monocytogenes strains isolated from invasive snails (Arion vulgaris) in Austria in 2019.
Pietzka, A., Murer, A,. Lennkh, A., Hauser, K., Vötsch, K., Springer, B., Allerberger, F., Ruppitsch, W. (2021). Microbiology Resource Announcements. 10:e00375-21.
DOI: https://doi.org/10.1128/MRA.00375-21
Project: LISTADAPT
Refinement of the COHESIVE Information System towards a unified ontology of food terms for the public health organisations.
Mangone, I., Radomski, N., Di Pasquale, A., Santurbano, A., Calistri, P., Cammà, C., Maassen, K. (2021).
DOI: https://doi.org/10.5281/zenodo.5482422
Project: COHESIVE
Mining Public Metagenomes for Environmental Surveillance of Parasites: A Proof of Principle.
Franssen F., Janse I., Janssen D., Caccio SM., Vatta P., van der Giessen J., van Passel MWJ. (2021). Frontiers in Microbiology. 12:622356.
DOI: https://doi.org/10.3389/fmicb.2021.622356
Project: PARADISE
A shotgun metagenomics approach to detect and characterise unauthorised genetically modified microorganisms in microbial fermentation products.
Buytaers, F E., Fraiture, M-A., Berbers, B., Vandermassen, E., Hoffman, S., Papazova, N., Vanneste, K., Marchal, K., Roosens, N H C., De Keersmaecker, S C J. (2021). Food Chemistry: Molecular Sciences. 2, 100023.
DOI: https://doi.org/10.1016/j.fochms.2021.100023
Project: FARMED
A user-friendly decision support tool to assist one-health risk assessors.
Dewar, R., Gavin, C., McCarthy, C., Taylor, R A., Cook, C., Simons, R R L. (2021).One Health, 13, 100266.
DOI: https://doi.org/10.1016/j.onehlt.2021.100266
Project: COHESIVE
Ongoing diphtheria outbreak in Yemen: a cross-sectional and genomic epidemiology study.
Badell, E., Alharazi, A., Criscuolo, A., Almoayed, K., Lefrancq, N., Bouchez, V., Guglielmini, J., Hennart, M., Carmi-Leroy, A., Zidane, N., Pascal-Perrigault, M., Lebreton, M., Martini, H., Salje, H., Toubiana, J., Dureab, F., Dhabaan, G., & Brisse, S., Rawah, A. & Al-Somainy, A. (2021).The Lancet Microbe. 2(8), E386-E396.
DOI: https://doi.org/10.1016/S2666-5247(21)00094-X
Project: Codes4strains
The Glossaryfication Web Service: an automated glossary creation tool to support the One Health community.
Scaccia, N., Günther, T., Lopez de Abechuco, E., Filter, M. (2021). Research Ideas and Outcomes, 7: e70183.
DOI: https://doi.org/10.3897/rio.7.e70183
Project: ORION
Monitoring of Antimicrobial Resistance to Aminoglycosides and Macrolides in Campylobacter coli and Campylobacter jejuni From Healthy Livestock in Spain (2002–2018).
Lopez-Chavarrias, V., Ugarte-Ruiz, M., Barcena, C., Olarra, A., Garcia, M., Saez, JL., de Frutos, C., Serrano, T., Perez, I., Moreno, MA., Dominguez, L., Alvarez, J. (2021). Frontiers in Microbiology. 12:689262.
DOI: https://doi.org/10.3389/fmicb.2021.689262
Project: DISCOVER
One Health practices across key agencies in Sweden – Uncovering barriers to cooperation, communication and coordination.
Humboldt-Dachroeden, S. (2021). Scandinavian Journal of Public Health, pp 1-7.
DOI: https://doi.org/10.1177/14034948211024483
Project: SUSTAIN
Clinically Relevant Escherichia coli Isolates from Process Waters and Wastewater of Poultry and Pig Slaughterhouses in Germany.
Savin, M., Bierbaum, G., Kreyenschmidt, J., Sib, E., Schmoger, S., Käsbohrer, A., Hammerl, J-A. (2021). Microorganisms. 9, 698.
DOI: https://doi.org/10.3390/microorganisms9040698
Projects: ARDIG and FULL- FORCE
Outcome of Different Sequencing and Assembly Approaches on the Detection of Plasmids and Localization of Antimicrobial Resistance Genes in Commensal Escherichia coli.
Juraschek, K., Borowiak, M., Tausch, SH., Malorny, B., Käsbohrer, A., Otani, S., Schwarz, S., Meemken, D., Deneke, C., Hammerl, JA. (2021). Microorganisms. 9, 598.
DOI: https://doi.org/10.3390/microorganisms903059
Projects: ARDIG and FULL- FORCE
A ready-to-use dose-response model of Campylobacter jejuni implemented in the FSKX-standard.
Sundermann, EM., Nauta, M., Swart, A. (2021). Food Modelling Journal 2: e63309.
DOI: https://doi.org/10.3897/fmj.2.63309
Project: MATRIX
In vivo and in vitro models show unexpected degrees of virulence among Toxoplasma gondii type II and III isolates from sheep.
Fernández-Escobar, M., Calero-Bernal, R., Regidor-Cerrillo, J., Vallejo, R., Benavides, J., Collantes-Fernández, E., Ortega-Mora, L. M. (2021). Veterinary Research 52, 82.
DOI: https://doi.org/10.1186/s13567-021-00953-7
Project: TOXOSOURCES
Parasitic Intestinal Protists of Zoonotic Relevance Detected in Pigs by Metabarcoding and Real-Time PCR.
Stensvold, CR., Jirků-Pomajbíková, K., Tams, KW., Jokelainen, P., Berg, RPKD., Marving, E., Petersen, Randi F., Andersen, L O’Brien., Angen, Ø., Nielsen, HV. (2021). Microorganisms. 9, 1189.
DOI: https://doi.org/10.3390/microorganisms9061189
Project: PARADISE
Isolation Procedure for CP E. coli from Caeca Samples under Review towards an Increased Sensitivity.
Pauly, N., Klaar, Y., Skladnikiewicz-Ziemer, T., Juraschek, K., Grobbel, M., Hammerl, JA., Hemmers, L., Käsbohrer, A., Schwarz, S., Meemken, D., Tenhagen, B-A., Irrgang, A. (2021). Microorganisms. 9, 1105.
DOI: https://doi.org/10.3390/microorganisms9051105
Project: IMPART
A one health glossary to support communication and information exchange between the human health, animal health and food safety sectors.
Buschhardt, Tasja., Günther, Taras., Skjerdal, Taran., Torpdahl, Mia., Gethmann, Jörn., Filippitzi, Maria-Eleni., Maassen, Catharina., Jore, Solveig., Ellis-Iversen, Johanne. (2021). One Health, 13.
DOI: https://doi.org/10.1016/j.onehlt.2021.100263
Effect of Biscuit Flour and Fermented Defatted “Alperujo” Co-Administration on Intestinal Mucosa Morphology and Productive Performance in Laying Hens.
Porras, N., Rebollada-Merino, A., Bárcena, C., Mayoral-Alegre, FJ., Lomillos, JM., Domínguez, L., Rodríguez-Bertos, A. (2021). Animals. 11, 1075.
DOI: https://doi.org/10.3390/ani11041075
Project: MoMIR
New global targets for NTDs in the WHO roadmap 2021–2030.
Casulli, A, (2021). PLoS Neglected Tropical Diseases. 15(5):e0009373.
DOI: https://doi.org/10.1371/journal.pntd.0009373
Project: MeME
One Health Surveillance Codex: promoting the adoption of One Health solutions within and across European countries.
Filter, Matthias., Buschhardt, Tasja., Dórea, Fernanda., Lopez de Abechuco, Estibaliz., Günther, Taras., Sundermann, Esther M.; Gethmann, Jörn., Dups-Bergmann, Johanna., Lagesen, Karin., Ellis-Iversen, Johanne. (2021). One Health, 12.
DOI: https://doi.org/10.1016/j.onehlt.2021.100233
Project: ORION
Assessing Environmental Factors within the One Health Approach.
Humboldt-Dachroeden, S., Mantovani, A. (2021). Medicina. 57(3), 240.
DOI: https://doi.org/10.3390/medicina57030240
Project: SUSTAIN (PhD)
Molecular analysis suggests that Namibian cheetahs (Acinonyx jubatus) are definitive hosts of a so far undescribed Besnoitia species.
Schares, G., Joeres, M., Rachel, F., Tuschy, M., Czirják, GÁ., Maksimov, P., Conraths, FJ., Wachter, B. (2021). Parasites and Vectors. 14, 201.
DOI: https://doi.org/10.1186/s13071-021-04697-3
Project: TOXOSOURCES
Expanding the Known Repertoire of C-Type Lectin Receptors Binding to Toxoplasma gondii Oocysts Using a Modified High-Resolution Immunofluorescence Assay.
Fabian, B. T., Lepenies, B., Schares, G., Dubey, J. P., Spano, F., Seeber, F. (2021). mSphere. 6:e01341-20.
DOI: https://doi.org/10.1128/mSphere.01341-20
Project: TOXOSOURCES
Infection prevention and control practices of ambulatory veterinarians: A questionnaire study in Finland.
Verkola, M., Järvelä, T., Järvinen, A., Jokelainen, P., Virtala, A.-M., Kinnunen, P. M., Heikinheimo, A. (2021).Veterinary Medicine and Science. p1-12.
DOI: https://doi.org/10.1002/vms3.464
Project: TOXOSOURCES
Experimental Infection with Toxoplasma gondii in Broiler Chickens (Gallus Domesticus): Seroconversion, Tissue Cyst Distribution, and Prophylaxis.
Nedişan, M. E., Györke, A., Ştefănuţ, C. L., Kalmár, Z., Friss, Z., Blaga, R., Blaizot, A., Toma-Naic, A., Mircean, V.; Schares, G., Djurković-Djaković, O., Klun, I., Villena, I., Cozma, V. (2021). Parasitology Research. 120, pp 593- 603.
DOI: https://doi.org/10.1007/s00436-020-06984-x
Project: TOXOSOURCES
Campylobacter jejuni isolates from whole-genome sequencing data.
Dahl, L.G., Joensen, K.G., Østerlund, M.T., Kill, K., Møller Nielsen, E. (2021). European Journal of Clinical Microbiology and Infectious Diseases. 40, 673–682.
DOI: https://doi.org/10.1007/s10096-020-04043-y
Project: BeOne
A real-time quantitative polymerase chain reaction for the specific detection of Hammondia hammondi and its differentiation from Toxoplasma gondii.
Schares, G., Globokar Vrhovec, M., Tuschy, M., Joeres, M., Bärwald, A., Koudela, B., Dubey, J. P., Maksimov, P., Conraths, F. J. (2021). Parasites and Vectors. 15, 74.
DOI: https://doi.org/10.1186/s13071-020-04571-8
Project: TOXOSOURCES
Molecular Methods for the Detection of Toxoplasma gondii Oocysts in Fresh Produce: An Extensive Review.
Slana, I., Bier, N., Bartosova, B., Marucci, G.,Possenti, P., Mayer-Scholl, A., Jokelainen, P., Lalle, M. (2021). Microorganisms. 9 (1), 167.
DOI: https://doi.org/10.3390/microorganisms9010167
Project: TOXOSOURCES
Exposure to Quaternary Ammonium Compounds Selects Resistance to Ciprofloxacin in Listeria monocytogenes.
Guérin, A., Bridier, A., Le Grandois, P., Sévellec, Y., Palma, F., Félix, B., Roussel, S., Soumet, C. (2021). Pathogens. 10, 220.
DOI: https://doi.org/10.3390/pathogens10020220
Project: LISTADAPT
Detection of Norovirus Variant GII.4 Hong Kong in Asia and Europe, 2017-2019.
Chi-Wai Chan, M,. Roy, S., Bonifacio, J., Zhang, YY., Chhabra, P., Chan, JCM., Celma, C., Igoy, MA., Lau SL., Mohammad, KN., Vinjé, J., Vennema, H., Breuer, J., Koopmans, M., de Graaf, M. (2021). Emerging Infectious Diseases. 27(1), pp 283- 293.
DOI: https://doi.org/10.3201/eid2701.203351
Project: METASTAVA
Identification of Echinococcus granulosus Genotypes G1 and G3 by SNPs Genotyping Assays.
Bonelli, P., Dei Giudici, S., Peruzzu, A., Mura, L., Santucciu, C., Maestrale, C., Masala, G. (2021). Pathogens. 10, 125.
DOI: https://doi.org/10.3390/pathogens10020125
Project: MEME
Monitoring SARS-CoV-2 Circulation and Diversity through Community Wastewater Sequencing, the Netherlands and Belgium.
Izquierdo-Lara, R,, Elsinga, G., Heijnen, L., et al. (2021). Emerging Infectious Diseases. 27(5), 1405-1415.
DOI: https://doi.org/10.3201/eid2705.204410
Project: METASTAVA
COVID-19 in health-care workers in three hospitals in the south of the Netherlands: a cross-sectional study.
Sikkema, RS., Pas, SD., Nieuwenhuijse, DF., O’Toole, A., Verweij, JJ., van der Linden, A., Chestakova, I., Schapendonk, C., Pronk, M., Lexmond, P., Bestebroer, T., Overmars, RJ., van Nieuwkoop, S., van den Bijllaardt, W., Bentvelsen RG., van Rijen, MML., Buiting, AGM., van Oudheusden, AJG., Diederen, BM., Bergmans, AMC., van der Eijk, A., Molenkamp, R., Rambaut, A., Timen, A., Kluytmans, JAJW., Oude Munnink, BB., Kluytmans van den Bergh, MFQ., Koopmans, MPG. (2021). The Lancet: Infectious Disease. 20(11), p1273-1280
DOI: https://doi.org/10.1016/S1473-3099(20)30527-2
Project: METASTAVA
Co-occurrence of the blaVIM-1 and blaSHV-12 genes on an IncHI2 plasmid of an Escherichia coli isolate recovered from German livestock.
Pauly, N., Hammerl, JA., Schwarz, S., Grobbel, M., Meemken, D., Malorny, B., Tenhagen, BA., Käsbohrer, A., Irrgang, A. (2020). Journal of Antimicrobial Chemotherapy. 76(2), 531–533.
DOI: https://doi.org/10.1093/jac/dkaa436
Project: IMPART
Molecular Characterisation of Giardia duodenalis in Children and Adults Sampled in Algeria.
Belkessa, S., Thomas-Lopez, D., Houali, K., Ghalmi, F., Stensvold, C R. (2021). Microorganisms. 9 (1), 54.
DOI: https://doi.org/10.3390/microorganisms9010054
Project: PARADISE
2020
List of OHEJP Publications 2020
DOI: https://doi.org/10.5281/zenodo.6281162
Advanced Methods for Detection of Bacillus cereus and Its Pathogenic Factors.
Ramarao, N., Tran, S-L, Marin, M., Vidic, J. (2020). Sensors. 20(9), 2667.
DOI: https://doi.org/10.3390/s20092667
Project: TOX-detect
Concomitant carriage of KPC-producing and non-KPC-producing Klebsiella pneumoniae ST512 within a single patient.
Jousset, A. B., Bonnin, R. A., Takissian, J., Girlich, D., Mihaila, L., Cabanel, N., Dortet, L., Glaser, P., & Naas, T. (2020). The Journal of antimicrobial chemotherapy, 75(8), 2087–2092.
DOI: https://doi.org/10.1093/jac/dkaa137
Project: MedVetKlebs
Molecular characterisation and antimicrobial susceptibility of C. jejuni isolates from Italian wild bird populations.
Marotta, F., Janowicz, A., Di Marcantonio, L., Ercole, C., Di Donato, G., Garofolo, G., Di Giannatale, E., (2020). Pathogens. 9(4), 304.
DOI: https://doi.org/10.3390/pathogens9040304
Project: AIR SAMPLE
Isolation, Genotyping, and Mouse Virulence Characterisation of Toxoplasma gondii From Free Ranging Iberian Pigs.
Fernández-Escobar, M., Calero-Bernal, R., Regidor-Cerrillo, J., Vallejo, R., Benavides, J., Collantes-Fernández, E., Ortega-Mora, LM. (2020). Frontiers in Veterinary Science. 7:604782.
DOI: https://doi.org/10.3389/fvets.2020.604782
Project: TOXOSOURCES
Genetic Characterisation of a Listeria monocytogenes Serotype IV b Variant 1 Strain Isolated from Vegetal Matrix in Italy.
Torresi, M., Orsini, M., Acciari, V., Centorotola, G., Di Lollo, V., Di Domenico, M, Manila Bianchi, D., Wakwamba Ziba, M., Tramuta, C., Cammà, C., Pomilioa, F. (2020). Microbiology Resource Announcements. 9:e00782-20.
DOI: https://doi.org/10.1128/MRA.00782-20
Project: LISTADAPT
Corynebacterium rouxii sp. nov., a novel member of the diphtheriae species complex.
Badell, E., Hennart, M., Rodrigues, C., Passet, V., Dazas, M., Panunzi, L., Bouchez, V., Carmi-Leroy, A., Toubiana, J., & Brisse, S. (2020). Research in microbiology, 171(3-4), 122–127.
DOI: https://doi.org/10.1016/j.resmic.2020.02.003
Project: Codes4strains (PhD)
Population genomics and antimicrobial resistance in Corynebacterium diphtheriae.
Hennart, M., Panunzi, LG., Rodrigues, C., Gaday, Q., Baines, SL., Barros-Pinkelnig, M., Carmi-Leroy, A., Dazas, M., Wehenkel, AM., Didelot, X., Toubiana, J., Badell, E., Brisse, S. (2020). Genome Medicine. 12, p 1-18.
DOI: https://doi.org/10.1186/s13073-020-00805-7
Project: Codes4strains (PhD)
Rapid SARS-CoV-2 whole-genome sequencing and analysis for informed public health decision-making in the Netherlands.
Oude Munnink, BB., Nieuwenhuijse, DF., Stein, M., O’Toole, A., Haverkate, M., Mollers, M., Kamga, SK., Schapendonk, C., Pronk, M., Lexmond, P., van der Linden, A., Bestebroer, T., Chestakova, I., Overmars, RJ., van Nieuwkoop, S., Molenkamp, R., van der Eijk, AA,. Geurtsvan Kessel, C., Vennema, H., Meijer, A., Rambaut, A., van Dissel, J., Sikkema, RS., Timen, A., Koopmans, M. (2020). Nature Medicine. 26, p 1405–1410.
DOI: https://doi.org/10.1038/s41591-020-0997-y
Project: METASTAVA
Mobile colistin resistance gene mcr-1 detected on an IncI1 plasmid in Escherichia coli from meat.
Brouwer, MSM., Goodman, RN., Kant, A., Mevius, D., Newire, E., Roberts, AP., Veldman, KT. (2020). Journal of Global Antimicrobial Resistance. 23, 145-148.
DOI: https://doi.org/10.1016/j.jgar.2020.08.018
Project: ARDIG
Identification of a blaVIM-1-Carrying IncA/C2 Multiresistance Plasmid in an Escherichia coli Isolate Recovered from the German Food Chain.
Pauly, N., Hammerl, JA., Grobbel, M., Käsbohrer, A., Tenhagen, BA., Malorny, B., Schwarz, S., Meemken, D., Irrgang, A. (2020). Microorganisms. 9, 29.
DOI: https://doi.org/10.3390/20microorganisms9010029
Project: IMPART
Diversity of mucoid to non-mucoid switch among carbapenemase-producing Klebsiella pneumoniae.
Chiarelli, A., Cabanel, N., Rosinski-Chupin, I., Zongo PD., Naas. T., Bonnin, RA., Glaser, P. (2020). BMC Microbiology, 20, 325.
DOI: https://doi.org/10.1186/s12866-020-02007-y
Project: MedVetKlebs
The importance of using whole genome sequencing and extended spectrum beta-lactamase selective media when monitoring antimicrobial resistance.
Duggett, N., AbuOun, M., Randall, L., Horton, R., Lemma, F., Rogers, J., Crook, D., Teale, C., Anjum, MF. (2020). Scientific Reports. 10, 19880.
DOI: https://doi.org/10.1038/s41598-020-76877-7
Project: ARDIG
Temporal dynamics of the fecal microbiota in veal calves in a 6-month field trial.
Massot, M., Haenni, M., Nguyen, TT., Madec, JY., Mentré, F., Denamur, E. (2020). Animal Microbiome. 2(32).
DOI: https://doi.org/10.1186/s42523-020-00052-6
Project: ARDIG
Modelling spread and surveillance of Mycobacterium avium subsp. paratuberculosis in the Swedish cattle trade network.
Rosendal, T., Widgren, S., Ståhl, K., Frössling, J. (2020). Preventative Veterinary Medicine. 183, 105152.
DOI: https://doi.org/10.1016/j.prevetmed.2020.105152
Project: NOVA
Novel IncFII plasmid harbouring blaNDM-4 in a carbapenem-resistant Escherichia coli of pig origin, Italy.
Diaconu, EL., Carfora, V., Alba, P., Di Matteo, P., Stravino, F., Buccella, C., Dell’Aira, E., Onorati, R., Sorbara, L., Battisti, A., Franco, A. (2020). Journal of Antimicrobial Chemotherapy. 75(12), 3475–3479.
DOI: https://doi.org/10.1093/jac/dkaa374
Project: IMPART and FULL-FORCE
First Detection of GES-5-Producing Escherichia coli from Livestock—An Increasing Diversity of Carbapenemases Recognized from German Pig Production.
Irrgang, A., Tausch SH., Pauly, N., Grobbel, M., Kaesbohrer, A,. Hammerl, JA. (2020). Microorganisms. 8 (10), 159.
DOI: https://doi.org/10.3390/microorganisms8101593
Project: IMPART
ChromID® CARBA Agar Fails to Detect Carbapenem-Resistant Enterobacteriaceae With Slightly Reduced Susceptibility to Carbapenems.
Pauly, N., Hammerl, JA., Grobbel, M., Tenhagen, BA., Käsbohrer, A., Bisenius, S., Fuchs, J., Horlacher, S., Lingstädt, H., Mauermann, U., Mitro, S., Müller, M., Rohrmann, S., Schiffmann, AP., Stührenberg, B., Zimmermann, P., Schwarz, S., Meemken, D., Irrgang, A. (2020). Frontiers in Microbiology. 11, 1678.
DOI: https://doi.org/10.3389/fmicb.2020.01678
Project: IMPART
Spatial Trends in Salmonella Infection in Pigs in Spain.
Teng, K. T., Martinez Avilés, M., Ugarte-Ruiz, M., Barcena, C., de la Torre, A., Lopez, G., Moreno, M. A., Dominguez, L., & Alvarez, J. (2020). Frontiers in veterinary science, 7, 345.
DOI: https://doi.org/10.3389/fvets.2020.00345
Project: NOVA
Spill-Over from Public Health? First Detection of an OXA-48-Producing Escherichia coli in a German Pig Farm.
Irrgang, A., Pauly, N., Tenhagen, BA., Grobbel, M., Kaesbohrer, A., Hammerl, JA. (2020). Microorganisms. 8(6), 855.
DOI: https://doi.org/10.3390/microorganisms8060855
Project: IMPART
Comparison of Two DNA Extraction Methods and Two PCRs for Detection of Echinococcus multilocularis in the Stool Samples of Naturally Infected Red Foxes.
Skrzypek, K., Karamon, J., Samorek-Pieróg, M., Dąbrowska, J., Kochanowski, M., Sroka, J., Bilska-Zając, E., Cencek Tomasz. (2020). Animals. 10, 2381.
DOI: https://doi.org/10.3390/ani10122381
Project: MeME
The state of One Health research across disciplines and sectors – a bibliometric analysis.
Sarah Humboldt-Dachroeden, S., Olivier, R., Frid-Nielsen, SS. (2020). One Health, 10, pp. 100146.
DOI: 10.1016/j.onehlt.2020.100146
Project: SUSTAIN (PhD)
Using stochastic dynamic modelling to estimate the sensitivity of current and alternative surveillance program of Salmonella in conventional broiler production.
Apenteng, OO., Arnold, ME., Vigre, H. (2020). Scientific Reports, 10, pp. 19441.
DOI: https://doi.org/10.1038/s41598-020-76514-3
Project: NOVA
Whole-Genome Sequencing to Detect Numerous Campylobacter jejuni Outbreaks and Match Patient Isolates to Sources, Denmark, 2015–2017.
Joensen, KG., Kiil, K., Gantzhorn, MR.,Nauerby, B., Engberg, J., Holt, HM.,Nielsen, HL.,Petersen, AM., Kuhn, KG.,Sandø, G.,Ethelberg, S., Nielsen, EM. (2020). Emerging Infectious Diseases, 26(3), 523-532.
DOI: https://dx.doi.org/10.3201/eid2603.190947
Project: ORION
Novel enteric viruses in fatal enteritis of grey squirrels.
Dastjerdi, A., Benfield, C., Everest, D., Stidworthy, MF., Zell, R. (2020). Journal of General Virology, 101, pp. 746–75.
DOI: https://doi.org/10.1099/jgv.0.001431
Project: MAD-Vir
An alternative workflow for molecular detection of SARS-CoV-2 – escape from the NA extraction kit-shortage, Copenhagen, Denmark, March 2020.
Fomsgaard, AS., Rosenstierne, MW. (2020). Eurosurveillance. 25(14), pp: 2000398.
DOI: https://doi.org/10.2807/1560-7917.ES.2020.25.14.2000398
Project: TELE-Vir
Cost-effectiveness analysis of using probiotics, prebiotics, or synbiotics to control Campylobacter in broilers.
van Wagenberg, CPA., van Horne, P.L.M., van Asseldonk, M.A.P.M. (2020). Poultry Science. 99 (8), pp. 4077- 4084.
DOI: https://doi.org/10.1016/j.psj.2020.05.003
Project: MOMIR
Climatic and topographic tolerance limits of wile boar in Eurasia: implications for their expansion.
Bosch, J., Iglesias, I., Martínez, M., de la Torre, A. (2020). Geography, Environment, Sustainability, 13(1), pp.107-114.
DOI: https://doi.org/10.24057/2071-9388-2019-52
Project: NOVA
A Multi-Scale Epidemic Model of Salmonella infection with Heterogeneous Shedding.
Labarthe, S., Laroche, B., Nguyen, T. N. T., Polizzi, B., Patout, F., Ribot, M., Stegmaier, T. (2020). ESAIM: Proceedings and Surveys, 67, p. 261-284.
DOI: https://doi.org/10.1051/proc/202067015
Project: MOMIR
A multi-center proposal for a fast screening tool in biosecured chicken flocks. Foodborne Campylobacter.
Hoorfar, J., Koláčková, I., Johannessen, GS., Garofolo, G., Marotta, F., Wieczorek, K., Osek, J., Torp, M., Spilsberg, B., Sekse, C., Thornval, NR., Karpíšková, R. (2020). Applied and Environmental Microbiology,
Project: AIRSAMPLE
Extensive antimicrobial resistance mobilization via multicopy plasmid encapsidation mediated by temperate phages.
Rodriguez-Rubio, L., Serna, C., Ares-Arroyo, M., Matamoros, BR., Delgado-Blas, JF., Montero, N., Bernabe-Balas, C., Wedel, EF., Mendez, IS., Muniesa, M., Gonzalez-Zorn, B. (2020). Journal of Antimicrobial Chemotherapy, 75 (11), pp. 3173–3180.
DOI: https://doi.org/10.1093/jac/dkaa311
Project: ARDIG
First report on the occurrence of Listeria monocytogenes ST121 strain in a dolphin brain.
Sévellec, Y., Torresi, M., Félix, B., Palma, F., Centorotola, G., Bilei, S., Senese, M., Terracciano, G., Leblanc, JC., Pomilio, F., Roussel, S. (2020). Pathogens. 9 (10), 802.
DOI: https://doi.org/10.3390/pathogens9100802
Project: LISTADAPT
Cystic Echinococcosis: Clinical, Immunological, and Biomolecular Evaluation of Patients from Sardinia (Italy).
Santucciu, C., Bonelli, P., Peruzzu, A., Fancellu, A., Marras, V., Carta, A., Mastrandrea, S., Bagella, G., Piseddu, T., Profili, S., Porcu, A., Masala, G. (2020). Pathogens. 9 (11), 907.
DOI: https://doi.org/10.3390/pathogens9110907
Project: MeME
Expression of in vivo biotinylated recombinant antigens SAG1 and SAG2A from Toxoplasma gondii for improved seroepidemiological bead-based multiplex assays.
Klein, S., Stern, D., Seeber, F. (2020). BMC Biotechnology. 20, 53.
DOI: https://doi.org/10.1186/s12896-020-00646-7
Project: TOXOSOURCES
Reduction of Salmonella Typhimurium cecal colonisation and improvement of intestinal health in broilers supplemented with fermented defatted ‘alperujo’, an olive oil by-product
Rebollada-Merino, A., Ugarte-Ruiz, M., Hernández, M., Miguela-Villoldo, P., Abad, D., Rodríguez-Lázaro, D., de Juan, L., Domínguez, L., Rodríguez-Bertos, A. (2020). Animals. 10 (10), 1931.
DOI: https://doi.org/10.3390/ani10101931
Project: MOMIR
A validated method to identify Echinococcus granulosus sensu lato at species level.
Santolamazza, F., Santoro, A., Possenti, A., Cacciò, S M., Casulli, A. (2020). Infection, Genetics and Evolution. 85, 104575.
DOI: https://doi.org/10.1016/j.meegid.2020.104575
Project: MeME
Bayesian Analysis of Three Methods for Diagnosis of Cystic Echinococcosis in Sheep.
Bonelli , P., Loi, F., Cancedda, MG., Peruzzu, A., Antuofermo, E., Pintore, E., Piseddu, T., Garippa, G., Masalam G. (2020). Pathogens. 9(10), 796.
DOI: https://doi.org/10.3390/pathogens9100796
Project: MeME
Species Detection within the Echinococcus granulosus sensu lato Complex by Novel Probe-Based Real-Time PCRs.
Maksimov, P., Bergmann, H., Wassermann, M., Romig, T., Gottstein, B., Casulli, A., Conraths, FJ. (2020). Pathogens, 9(10), 791.
DOI: https://doi.org/10.3390/pathogens9100791
Project: MeME
Dietary supplementation with fermented defatted “alperujo” induces modifications of the intestinal mucosa and cecal microbiota of broiler chickens.
Rebollada-Merino, A., Ugarte-Ruiz, M., Hernández, M., Miguela-Villoldo, P., Abad, D., Cuesta-Álvaro, P., Rodríguez-Lázaro, D., de Juan, L., Domínguez, L., Rodríguez-Bertos, A. (2020). Poultry Science.
DOI: https://doi.org/10.1016/j.psj.2020.07.015
Project: MOMIR
Gut microbiota composition before infection determines the Salmonella super‐ and low‐shedder phenotypes in chicken.
Kempf, F., Menanteau, P., Rychlik, I., Kubasová, T., Trotereau, J., Virlogeux‐Payant, I., Schaeffer, S., Schouler, C., Drumo, R., Guitton, E., Velge, P. (2020). Microbial Biotechnology. 13( 5), 1611– 1630.
DOI: https://doi.org/10.1111/1751-7915.13621
Project: MOMIR
Isolation and genetic characterization of Toxoplasma gondii in Spanish sheep flocks.
Fernández-Escobar, M., Calero-Bernal, R., Benavides, J., Regidor-Cerrillo, J., Guerrero-Molina, M. C., Gutiérrez-Expósito, D., Collantes-Fernández, E., Ortega-Mora, L. M. (2020). Parasites and Vectors.
DOI: https://doi.org/10.1186/s13071-020-04275-z
Project: TOXOSOURCES
Fluorescent bead-based serological detection of Toxoplasma gondii infection in chickens.
Fabian, B. T., Hedar, F., Koethe, M., Bangoura, B., Maksimov, P., Conraths, F. J., Villena, I., Aubert, D., Seeber, F., Schares, G. (2020). Parasites and Vectors.
DOI: https://doi.org/10.1186/s13071-020-04244-6
Project: TOXOSOURCES
Veterinary Students Have A Higher Risk Of Contracting Cryptosporidiosis When Calves With High Fecal Cryptosporidium Loads Are Used For Fetotomy Exercises.
Lopez, T., Müller, L., Vestergaard, LS., Applied and Environmental Microbiology.
DOI: https://doi.org/10.1128/AEM.01250-20
Project: PARADISE
The One Health European Joint Programme (OHEJP), 2018–2022: an exemplary One Health initiative.
Brown, HL., Passey, JL., Getino, M., Pursley, I., Basu, P., Horton, DL., La Ragione, RM. (2020). Journal of Medical Microbiology, pp 1-3.
DOI: https://doi.org/10.1099/jmm.0.001228
MLST-based genetic relatedness of Campylobacter jejuni isolated from chickens and humans in Poland
Wieczorek, K., Wołkowicz, T., Osek, J. (2020). PLOS ONE, 15(1), e0226238
DOI: https://doi.org/10.1371/journal.pone.0226238
Project: AIRSAMPLE
Effects on Intestinal Mucosal Morphology, Productive Parameters and Microbiota Composition after Supplementation with Fermented Defatted Alperujo (FDA) in Laying Hens
Rebollada-Merino A., Bárcena C., Ugarte-Ruiz M., Porras-González N., Mayoral-Alegre F., Tome-Sánchez I., Domínguez L. and Rodríguez-Bertos A. (2020). Antibiotics, 8(4), pp. 215
DOI: https://doi.org/10.3390/antibiotics8040215
Project: MedVetKlebs
Broad-Spectrum Cephalosporin-Resistant Klebsiella spp. Isolated from Diseased Horses in Austria
Loncaric, I., Rosel, AC., Szostak, MP., Licka, TF., Allerberger, F., Ruppitsch, W., Spergser, J. (2020). Animals, 10(2), pp. 332
DOI: https://doi.org/10.3390/ani10020332
Project: MedVetKlebs
Campylobacter in chicken- Critical parameters for international, multi-centre evaluation of air sampling and detection method
Johannessen, GS., Giuliano Garofolo, G., Di Serafino, G.,Koláčková, I., Karpíšková, R., Wieczorek, K., Osek, J., Christensen, J., Torp, M., Hoorfar, J. (2020). Food Microbiology, 90, 1-6
DOI: https://doi.org/10.1016/j.fm.2020.103455
Project: AIRSAMPLE
Evaluation of a commercial exogenous internal process control for diagnostic RNA virus metagenomics from different animal clinical samples
Van Borm, S., Fu, Q., Winand, R., Vanneste, K., Hakhverdyan, M., Höper, D., Vandenbussche, F. (2020). Journal of Virological Methods, 283
DOI: https://doi.org/10.1016/j.jviromet.2020.113916
Project: METASTAVA
Klebsiella pneumoniae carriage in low-income countries: antimicrobial resistance, genomic diversity and risk factors
Huynh, BT., Passet, V., Rakotondrasoa, A.,. Diallo, T., Kerleguer, A., Hennart, M., Lauzanne, A., Herindrainy, P., Seck, A., Bercion, R., Borand, L., Pardos de la Gandara, M., Delarocque-Astagneau, E., Guillemot, D., Vray, M., Garin, B., Collard, JM., Rodrigues, C., Brisse, S. (2020). Gut Microbes, 11(5), pp. 1287-1299
DOI: https://doi.org/10.1080/19490976.2020.1748257
Project: MedVetKlebs
The ZKIR Assay, a Real-Time PCR Method for the Detection of Klebsiella pneumoniae and Closely Related Species in Environmental Samples
Barbier, E., Rodrigues, C., Depret, G., Passet, V., Gal, L., Piveteau, P., Brisse, S. (2020). Applied and Environmental Microbiology, 86(7), pp. e02711-19.
DOI: https://doi.org/10.1128/AEM.02711-19
Project: MedVetKlebs
Stepwise evolution and convergent recombination underlie the global dissemination of carbapenemase-producing Escherichia coli
Patiño-Navarrete, R., Rosinski-Chupin, I., Cabanel, N., Gauthier, L., Takissian, J., Madec, JY., Hamze, M., Bonnin, RA., Naas, T., Glaser, P. (2020). Genome Medicine, 12(10)
DOI: https://doi.org/10.1186/s13073-019-0699-6
Project: ARDIG
Microsatellite Investigations of Multiple Echinococcus granulosus Sensu Stricto Cysts in Single Hosts Reveal Different Patterns of Infection Events between Livestock and Humans
M’rad, S., Oudni-M’rad, M., Bastid, V., Bournez, L., Mosbahi, S., Nouri, A., Babba, H., Grenouillet, F., Boué, F., Umhang, G. (2020). Pathogens, 9(6), pp. 444
DOI: https://doi.org/10.3390/pathogens9060444
Project: MeME
Analysis of COMPASS, a New Comprehensive Plasmid Database Revealed Prevalence of Multireplicon and Extensive Diversity of IncF Plasmids.
Douarre, P E., Mallet, L., Radomski, N., Felten, A., Mistou, M. (2020) Frontiers in Microbiology, 11, pp. 1-15.
DOI: https://doi.org/10.3389/fmicb.2020.00483.
Project: RaDAR
Recognising the substantial burden of neglected pandemics cystic and alveolar echinococcosis.
Casulli, A. (2020) The Lancet, 8 (4): PE470-E471
DOI: https://doi.org/10.1016/S2214-109X(20)30066-8
Project: MeME
2019
Point-of-Need DNA Testing for Detection of Foodborne Pathogenic Bacteria.
Vidic, J., Vizzini, P., Manzano, M., Kavanaugh, D., Ramarao, N., Zivkovic, M., Radonic, V., Knezevic, N., Giouroudi, I., Gadjanski, I. (2019). Sensors. 19(5), 1100.
DOI: https://doi.org/10.3390/s19051100
Project: TOX-detect
Large-Scale Genomic Analyses and Toxinotyping of Clostridium perfringens Implicated in Foodborne Outbreaks in France.
Mahamat Abdelrahim, A., Radomski, N., Delannoy, S., Djellal, S., Le Négrate, M., Hadjab, K., Fach, P., Hennekinne, J-A., Mistou, M-Y., Firmesse, O. (2019). Frontiers in Microbiology. 10:777.
DOI: https://doi.org/10.3389/fmicb.2019.00777
Project: TOX-detect
Opportunities for Improved Disease Surveillance and Control by Use of Integrated Data on Animal and Human Health.
Houe, H., Nielsen, SS., Nielsen, LR., Ethelberg, S., Mølbak, K. (2020). Frontiers in Veterinary Medicine, 6: 301, pp. 1-8.
DOI: https://doi.org/10.3389/fvets.2019.00301
Project: ORION
An outbreak of monophasic Salmonella Typhimurium associated with raw pork sausage and other pork products, Denmark 2018–19.
Helmuth, IG., Espenhain, L., Ethelberg, S., Jensen, T., Kjeldgaard, J., Litrup, E., Schjørring, S., Müller, L. (2019). Epidemiology and Infection, 147, pp. e315.
DOI: https://doi.org/10.1017/S0950268819002073
Project: NOVA
Whole genome sequencing reveals resemblance between ESBL-producing and carbapenem resistant Klebsiella pneumoniae isolates from Austrian rivers and clinical isolates from hospitals.
Lepuschitz, S., Schill, S., Stoeger, A., Pekard-Amenitsch, S., Huhulescu, S., Inreiter, N., Hartl, R., Kerschner, H., Sorschag, S., Springer, B., Brisse, S., Allerberger, F., Mach, RL., Ruppitsch, W. (2019). Science of the Total Environment, 662, pp. 227-235.
DOI: https://doi.org/10.1016/j.scitotenv.2019.01.179
Project: MedVetKlebs
Antimicrobial Usages and Antimicrobial Resistance in Commensal Escherichia coli From Veal Calves in France: Evolution During the Fattening Process.
Gay, E., Bour, M., Cazeau, G., Jarrige, N., Martineau, C., Madec, JY., Haenni, M. (2019). Frontiers in Microbiology, 10, pp. 792.
DOI: https://doi.org/10.3389/fmicb.2019.00792
Project: ARDIG
The shufflon of IncI1 plasmids is rearranged constantly during different growth conditions
Brouwer, MSM., Jurburg, SD., Harders, F., Kant, A., Mevius, DJ., Roberts, AP., Bossers, A. (2019). Plasmid, 120, pp. 51-55
DOI: https://doi.org/10.1016/j.plasmid.2019.03.003
Project: ARDIG
Description of Klebsiella spallanzanii sp. nov. and of Klebsiella pasteurii sp. nov.
Merla C, Rodrigues C, Passet V, Corbella M, Thorpe H A, Kallonen T V S, Zong Z, Marone P, Bandi C, Sassera D, Corander J, Feil E J and Brisse S. (2019). Frontiers in Microbiology
DOI: https://doi.org/10.3389/fmicb.2019.02360
Project: MedVetKlebs
Identifying emerging trends in antimicrobial resistance using Salmonella surveillance data in poultry in Spain
Alvarez J., Lopez G., Muellner P., de Frutos C., Ahlstrom C., Serrano T., Moreno MA., Duran M., Saez JL., Dominguez L., Ugarte-Ruiz M. (2019). Transboundary and Emerging Diseases, 67(1), pp. 250-262
DOI: https://doi.org/10.1111/tbed.13346
Project: NOVA
Monitoring Antimicrobial Resistance and Drug Usage in the Human and Livestock Sector and Foodborne Antimicrobial Resistance in Six European Countries.
Mesa Varona, O., Chaintarli, K., Muller-Pebody, B., Anjum, MF., Eckmanns, T., Norström, M., Boone, I. (2019). Dovepress, 13, pp. 957-993
DOI: https://doi.org/10.2147/IDR.S237038
Project: ARDIG
Salmonella Surveillance Systems in Swine and Humans in Spain: A Review.
Marta Martínez-Avilés, Macarena Garrido-Estepa, Julio Álvarez, Ana de la Torre. (2019). Veterinary Sciences. 6, 20
Project: NOVA
Field samplings of Ixodes ricinus ticks from a tick-borne encephalitis virus micro-focus in Northern Zealand, Denmark.
Petersen A, Rosenstierne MW, Rasmussen M, Fuursted K, Nielsen HV, O’Brien Andersen L, Bødker R, Fomsgaard A. (2019) Ticks and Tick Borne Disease, 10(5):1028-1032.
DOI: 10.1016/j.ttbdis.2019.05.005.
Project: MAD-Vir
Attributable sources of community-acquired carriage of Escherichia coli containing β-lactam antibiotic resistance genes: a population-based modelling study.
Mughini-Gras L, Dorado-García A, van Duijkeren E, van den Bunt G, Dierikx CM, Bonten MJM, Bootsma MCJ, Schmitt H, Hald T, Evers EG, de Koeijer A, van Pelt W, Franz E, Mevius DJ, Heederik DJJ; ESBL Consortium. (2019) Lancet Planetary Health. 3(8):e357-e369.
DOI: 10.1016/S2542-5196(19)30130-5
Project: RaDAR
List of new names and new combinations previously effectively, but not validly, published.
Oren and Garrity. (2019) International Journal of Systematic and Evolutionary Microbiology, 69:2627–2629
DOI:DOI 10.1099/ijsem.0.003624
Project: MedVetKlebs
Outbreak of Yersinia bactin-producing Klebsiella pneumoniae in a Neonatal Intensive Care Unit
Wisgrill L, Lepuschitz S, Blaschitz M, Rittenschober-Böhm J, Diab-El Schahawi M, Schubert S, et al. (2019) The Pediatric Infectious Disease Journal, 38:638-42
DOI: https://doi.org/10.1097/INF.0000000000002258
Project: MedVetKlebs
Toxoplasma gondii infection and toxoplasmosis in farm animals: Risk factors and economic impact
Stelzer, S., Basso, W., Benavides Silván, J., Ortega-Mora, L.M., Maksimov, P., Gethmann, J., Conraths, F.J., Schares, G. (2019). . Food and Waterborne Parasitology, 12, pp. e00037.
DOI: https://doi.org/10.1016/j.fawpar.2019.e00037
Project: ORION
Description of Klebsiella africanensis sp. nov., Klebsiella variicola subsp. tropicalensis subsp. nov. and Klebsiella variicola subsp. variicola subsp. nov.
Rodrigues, C., Passet V., Rakotondrasoa, A., Diallo, TA., Criscuolo, A., Brisse, S. (2019) Research in Microbiology.
DOI: https://doi.org/10.1016/j.resmic.2019.02.003
Project: MedVetKlebs
2018
Role of systemic infection, cross contaminations and super-shedders in Salmonella carrier state in chicken.
Menanteau, P. Kempf, F., Trotereau, J., Virlogeux-Payant, I., Gitton, E., Dalifard, J., Gabriel, I., Rychlik, I., Velge, P. (2018). Environmental Microbiology. 20 (9), 3246–3260.
DOI: https://doi.org/10.1111/1462-2920.14294
Project: MOMIR
Non-Typhi, non-Paratyphi Salmonella-related hospitalisations in Spain: trends, clinical aspects, risk factors for worse prognosis and hospital costs.
Garrido-Estepa, M., Latasa, P., Ordóñez-León, G.Y. et al. (2018) European Journal of Clinical Microbiology and Infectious Disease.
DOI: 10.1007/s10096-018-3433-1
ISSN: 1435-4373
Project: NOVA
Analysis of consumer food purchase data used for outbreak investigations, a review.
Møller Frederik T, Mølbak Kåre, Ethelberg Steen. (2018) Euro Surveill.
DOI: 10.2807/1560-7917.ES.2018.23.24.1700503
Project: NOVA
Population Genetic Structure of Listeria monocytogenes Strains Isolated From the Pig and Pork Production Chain in France.
Félix B, Feurer C, Maillet A, Guillier L, Boscher E, Kerouanton A, Denis M, Roussel S. (2018). Front. Microbiol.
Project: LISTADAPT
Veterinarios y antibióticos: destinados a entenderse.
Moreno MA., Florez-Cuadrado D., Ugarte-Ruiz M. and Dominguez L. (2018).Profesión Veterinaria. Asis,
ISBN: 2253-7244. 2018.
Project: MoMIR-PPC
Antimicrobial Resistance in the Food Chain in the European Union.
Florez-Cuadrado D., Moreno MA., Ugarte-Ruiz M. and Dominguez L. (2018). Advances in Food and Nutrition Research. Elsevier
ISBN: 9780128139776. 2018
DOI: 10.1016/bs.afnr.2018.04.004
Project: MoMIR-PPC
Role of systemic infection, cross contaminations and super-shedders in Salmonella carrier state in chicken.
Menanteau P, Kempf F, Trotereau J, Virlogeux-Payant I, Guitton E, Dalifard J, Gabriel I, Rychlik I, and Velge P. (2018). Environmental Microbiology.
Project: MoMIR-PPC
Identification of Klebsiella pneumoniae, Klebsiella quasipneumoniae, Klebsiella variicola and related phylogroups by MALDI-TOF Mass Spectrometry.
Rodrigues C, Passet V, Rakotondrasoa A, Brisse S (2018). Front. Microbiol. 9:3000
Project: MedVetKlebs
