Publications

2021

A one health glossary to support communication and information exchange between the human health, animal health and food safety sectors.

Buschhardt, Tasja., Günther, Taras., Skjerdal, Taran., Torpdahl, Mia., Gethmann, Jörn., Filippitzi, Maria-Eleni., Maassen, Catharina., Jore, Solveig., Ellis-Iversen, Johanne. (2021). One Health, 13.

DOI: https://doi.org/10.1016/j.onehlt.2021.100263

Project: ORION

Effect of Biscuit Flour and Fermented Defatted “Alperujo” Co-Administration on Intestinal Mucosa Morphology and Productive Performance in Laying Hens.

Porras, N., Rebollada-Merino, A., Bárcena, C., Mayoral-Alegre, FJ., Lomillos, JM., Domínguez, L., Rodríguez-Bertos, A. (2021). Animals. 11, 1075.

DOI: https://doi.org/10.3390/ani11041075

Project: MoMIR

New global targets for NTDs in the WHO roadmap 2021–2030.

Casulli, A, (2021). PLoS Neglected Tropical Diseases. 15(5):e0009373.

DOI: https://doi.org/10.1371/journal.pntd.0009373

Project: MeME

One Health Surveillance Codex: promoting the adoption of One Health solutions within and across European countries.

Filter, Matthias., Buschhardt, Tasja., Dórea, Fernanda., Lopez de Abechuco, Estibaliz., Günther, Taras., Sundermann, Esther M.; Gethmann, Jörn., Dups-Bergmann, Johanna., Lagesen, Karin., Ellis-Iversen, Johanne. (2021). One Health, 12.

DOI: https://doi.org/10.1016/j.onehlt.2021.100233

Project: ORION

Assessing Environmental Factors within the One Health Approach.

Humboldt-Dachroeden, S., Mantovani, A. (2021). Medicina. 57(3), 240.

DOI: https://doi.org/10.3390/medicina57030240

Project: SUSTAIN (PhD)

Molecular analysis suggests that Namibian cheetahs (Acinonyx jubatus) are definitive hosts of a so far undescribed Besnoitia species. 

Schares, G., Joeres, M., Rachel, F., Tuschy, M., Czirják, GÁ., Maksimov, P., Conraths, FJ., Wachter, B. (2021). Parasites and Vectors. 14, 201.

DOI: https://doi.org/10.1186/s13071-021-04697-3

Project: TOXOSOURCES

Expanding the Known Repertoire of C-Type Lectin Receptors Binding to Toxoplasma gondii Oocysts Using a Modified High-Resolution Immunofluorescence Assay.

Fabian, B. T., Lepenies, B., Schares, G., Dubey, J. P., Spano, F., Seeber, F. (2021). mSphere. 6:e01341-20.

DOI: https://doi.org/10.1128/mSphere.01341-20

Project: TOXOSOURCES

Infection prevention and control practices of ambulatory veterinarians: A questionnaire study in Finland. 

Verkola, M., Järvelä, T., Järvinen, A., Jokelainen, P., Virtala, A.-M., Kinnunen, P. M., Heikinheimo, A. (2021).Veterinary Medicine and Science. p1-12.

DOI: https://doi.org/10.1002/vms3.464

Project: TOXOSOURCES

Experimental Infection with Toxoplasma gondii in Broiler Chickens (Gallus Domesticus): Seroconversion, Tissue Cyst Distribution, and Prophylaxis. 

Nedişan, M. E., Györke, A., Ştefănuţ, C. L., Kalmár, Z., Friss, Z., Blaga, R., Blaizot, A., Toma-Naic, A., Mircean, V.; Schares, G., Djurković-Djaković, O., Klun, I., Villena, I., Cozma, V. (2021). Parasitology Research. 120, pp 593- 603.

DOI: https://doi.org/10.1007/s00436-020-06984-x

Project: TOXOSOURCES

A real-time quantitative polymerase chain reaction for the specific detection of Hammondia hammondi and its differentiation from Toxoplasma gondii

Schares, G., Globokar Vrhovec, M., Tuschy, M., Joeres, M., Bärwald, A., Koudela, B., Dubey, J. P., Maksimov, P., Conraths, F. J. (2021). Parasites and Vectors. 15, 74.

DOI: https://doi.org/10.1186/s13071-020-04571-8

Project: TOXOSOURCES

Molecular Methods for the Detection of Toxoplasma gondii Oocysts in Fresh Produce: An Extensive Review. 

Slana, I., Bier, N., Bartosova, B., Marucci, G.,Possenti, P., Mayer-Scholl, A., Jokelainen, P., Lalle, M. (2021). Microorganisms. 9 (1), 167.

DOI: https://doi.org/10.3390/microorganisms9010167

Project: TOXOSOURCES

Exposure to Quaternary Ammonium Compounds Selects Resistance to Ciprofloxacin in Listeria monocytogenes.

Guérin, A., Bridier, A., Le Grandois, P., Sévellec, Y., Palma, F., Félix, B., Roussel, S., Soumet, C. (2021). Pathogens. 10, 220.

DOI: https://doi.org/10.3390/pathogens10020220

Project: LISTADAPT

Detection of Norovirus Variant GII.4 Hong Kong in Asia and Europe, 2017-2019.

Chi-Wai Chan, M,. Roy, S., Bonifacio, J., Zhang, YY., Chhabra, P., Chan, JCM., Celma, C., Igoy, MA., Lau SL., Mohammad, KN., Vinjé, J., Vennema, H., Breuer, J., Koopmans, M., de Graaf, M. (2021). Emerging Infectious Diseases. 27(1), pp 283- 293.

DOI: https://doi.org/10.3201/eid2701.203351

Project: METASTAVA

Identification of Echinococcus granulosus Genotypes G1 and G3 by SNPs Genotyping Assays.

Bonelli, P., Dei Giudici, S., Peruzzu, A., Mura, L., Santucciu, C., Maestrale, C., Masala, G. (2021). Pathogens. 10, 125.

DOI: https://doi.org/10.3390/pathogens10020125

Project: MEME

COVID-19 in health-care workers in three hospitals in the south of the Netherlands: a cross-sectional study.

Sikkema, RS., Pas, SD., Nieuwenhuijse, DF., O’Toole, A., Verweij, JJ., van der Linden, A., Chestakova, I., Schapendonk, C., Pronk, M., Lexmond, P., Bestebroer, T., Overmars, RJ., van Nieuwkoop, S., van den Bijllaardt, W., Bentvelsen RG., van Rijen, MML., Buiting, AGM., van Oudheusden, AJG., Diederen, BM., Bergmans, AMC., van der Eijk, A., Molenkamp, R., Rambaut, A., Timen, A., Kluytmans, JAJW., Oude Munnink, BB., Kluytmans van den Bergh, MFQ., Koopmans, MPG. (2021). The Lancet: Infectious Disease. 20(11), p1273-1280

DOI: https://doi.org/10.1016/S1473-3099(20)30527-2

Project: METASTAVA

Co-occurrence of the blaVIM-1 and blaSHV-12 genes on an IncHI2 plasmid of an Escherichia coli isolate recovered from German livestock.

Pauly, N., Hammerl, JA., Schwarz, S., Grobbel, M., Meemken, D., Malorny, B., Tenhagen, BA., Käsbohrer, A., Irrgang, A. (2020). Journal of Antimicrobial Chemotherapy. 76(2), 531–533.

DOI: https://doi.org/10.1093/jac/dkaa436

Project: IMPART

Molecular Characterisation of Giardia duodenalis in Children and Adults Sampled in Algeria.

Belkessa, S., Thomas-Lopez, D., Houali, K., Ghalmi, F., Stensvold, C R. (2021). Microorganisms. 9 (1), 54.

DOI: https://doi.org/10.3390/microorganisms9010054 

Project: PARADISE

2020

Population genomics and antimicrobial resistance in Corynebacterium diphtheriae. 

Hennart, M., Panunzi, LG., Rodrigues, C., Gaday, Q., Baines, SL., Barros-Pinkelnig, M., Carmi-Leroy, A., Dazas, M., Wehenkel, AM., Didelot, X., Toubiana, J., Badell, E., Brisse, S. (2020). Genome Medicine. 12, p 1-18.

DOI: https://doi.org/10.1186/s13073-020-00805-7

Project: Codes4strains (PhD)

Rapid SARS-CoV-2 whole-genome sequencing and analysis for informed public health decision-making in the Netherlands.

Oude Munnink, BB., Nieuwenhuijse, DF., Stein, M., O’Toole, A., Haverkate, M., Mollers, M., Kamga, SK., Schapendonk, C., Pronk, M., Lexmond, P., van der Linden, A., Bestebroer, T., Chestakova, I., Overmars, RJ., van Nieuwkoop, S., Molenkamp, R., van der Eijk, AA,. Geurtsvan Kessel, C., Vennema, H., Meijer, A., Rambaut, A., van Dissel, J., Sikkema, RS., Timen, A., Koopmans, M. (2020). Nature Medicine. 26, p 1405–1410.

DOI: https://doi.org/10.1038/s41591-020-0997-y

Project: METASTAVA

Mobile colistin resistance gene mcr-1 detected on an IncI1 plasmid in Escherichia coli from meat.

Brouwer, MSM.,  Goodman, RN., Kant, A., Mevius, D., Newire, E., Roberts, AP., Veldman, KT. (2020). Journal of Global Antimicrobial Resistance. 23, 145-148.

DOI: https://doi.org/10.1016/j.jgar.2020.08.018

Project: ARDIG

Identification of a blaVIM-1-Carrying IncA/C2 Multiresistance Plasmid in an Escherichia coli Isolate Recovered from the German Food Chain.

Pauly, N., Hammerl, JA., Grobbel, M., Käsbohrer, A., Tenhagen, BA., Malorny, B., Schwarz, S., Meemken, D., Irrgang, A. (2020). Microorganisms. 9, 29.

DOI: https://doi.org/10.3390/20microorganisms9010029

Project: IMPART

Diversity of mucoid to non-mucoid switch among carbapenemase-producing Klebsiella pneumoniae.

Chiarelli, A., Cabanel, N., Rosinski-Chupin, I., Zongo PD., Naas. T., Bonnin, RA., Glaser, P. (2020). BMC Microbiology, 20, 325.

DOI: https://doi.org/10.1186/s12866-020-02007-y

Project: MedVetKlebs

The importance of using whole genome sequencing and extended spectrum beta-lactamase selective media when monitoring antimicrobial resistance.

Duggett, N., AbuOun, M., Randall, L., Horton, R., Lemma, F., Rogers, J., Crook, D., Teale, C., Anjum, MF. (2020). Scientific Reports. 10, 19880.

DOI: https://doi.org/10.1038/s41598-020-76877-7

Project: ARDIG

Temporal dynamics of the fecal microbiota in veal calves in a 6-month field trial.

Massot, M., Haenni, M., Nguyen, TT., Madec, JY., Mentré, F., Denamur, E. (2020). Animal Microbiome. 2(32).

DOI: https://doi.org/10.1186/s42523-020-00052-6

Project: ARDIG

Modelling spread and surveillance of Mycobacterium avium subsp. paratuberculosis in the Swedish cattle trade network.

Rosendal, T., Widgren, S., Ståhl, K., Frössling, J. (2020). Preventative Veterinary Medicine. 183, 105152.

DOI: https://doi.org/10.1016/j.prevetmed.2020.105152

Project: NOVA

Novel IncFII plasmid harbouring blaNDM-4 in a carbapenem-resistant Escherichia coli of pig origin, Italy.

Diaconu, EL., Carfora, V., Alba, P., Di Matteo, P., Stravino, F., Buccella, C., Dell’Aira, E., Onorati, R., Sorbara, L., Battisti, A., Franco, A. (2020). Journal of Antimicrobial Chemotherapy. 75(12), 3475–3479.

DOI: https://doi.org/10.1093/jac/dkaa374

Project: IMPART and FULL-FORCE

First Detection of GES-5-Producing Escherichia coli from Livestock—An Increasing Diversity of Carbapenemases Recognized from German Pig Production. 

Irrgang, A., Tausch SH., Pauly, N., Grobbel, M., Kaesbohrer, A,. Hammerl, JA. (2020). Microorganisms. 8 (10), 159.

DOI: https://doi.org/10.3390/microorganisms8101593

Project: IMPART

ChromID® CARBA Agar Fails to Detect Carbapenem-Resistant Enterobacteriaceae With Slightly Reduced Susceptibility to Carbapenems.

Pauly, N., Hammerl, JA., Grobbel, M., Tenhagen, BA., Käsbohrer, A., Bisenius, S., Fuchs, J., Horlacher, S., Lingstädt, H., Mauermann, U., Mitro, S., Müller, M., Rohrmann, S., Schiffmann, AP., Stührenberg, B., Zimmermann, P., Schwarz, S., Meemken, D., Irrgang, A. (2020). Frontiers in Microbiology. 11, 1678.

DOI: https://doi.org/10.3389/fmicb.2020.01678

Project: IMPART

Spill-Over from Public Health? First Detection of an OXA-48-Producing Escherichia coli in a German Pig Farm. 

Irrgang, A., Pauly, N., Tenhagen, BA., Grobbel, M., Kaesbohrer, A., Hammerl, JA. (2020). Microorganisms. 8(6), 855.

DOI: https://doi.org/10.3390/microorganisms8060855

Project: IMPART

Comparison of Two DNA Extraction Methods and Two PCRs for Detection of Echinococcus multilocularis in the Stool Samples of Naturally Infected Red Foxes.

Skrzypek, K., Karamon, J.,  Samorek-Pieróg, M., Dąbrowska, J., Kochanowski, M., Sroka, J., Bilska-Zając, E., Cencek Tomasz. (2020).  Animals. 10, 2381.

DOI: https://doi.org/10.3390/ani10122381

Project: MeME

The state of One Health research across disciplines and sectors – a bibliometric analysis.

Sarah Humboldt-Dachroeden, S., Olivier, R., Frid-Nielsen, SS. (2020). One Health, 10, pp. 100146.

DOI: 10.1016/j.onehlt.2020.100146

Project: SUSTAIN (PhD)

Using stochastic dynamic modelling to estimate the sensitivity of current and alternative surveillance program of Salmonella in conventional broiler production. 

Apenteng, OO., Arnold, ME., Vigre, H. (2020). Scientific Reports, 10, pp. 19441.

DOI: https://doi.org/10.1038/s41598-020-76514-3

Project: NOVA

Whole-Genome Sequencing to Detect Numerous Campylobacter jejuni Outbreaks and Match Patient Isolates to Sources, Denmark, 2015–2017. 

Joensen, KG., Kiil, K., Gantzhorn, MR.,Nauerby, B., Engberg, J., Holt, HM.,Nielsen, HL.,Petersen, AM., Kuhn, KG.,Sandø, G.,Ethelberg, S., Nielsen, EM. (2020). Emerging Infectious Diseases, 26(3), 523-532.

DOI: https://dx.doi.org/10.3201/eid2603.190947

Project: ORION

Novel enteric viruses in fatal enteritis of grey squirrels.

Dastjerdi, A., Benfield, C., Everest, D., Stidworthy, MF., Zell, R. (2020). Journal of General Virology, 101, pp. 746–75.

DOI: https://doi.org/10.1099/jgv.0.001431

Project: MAD-Vir 

An alternative workflow for molecular detection of SARS-CoV-2 – escape from the NA extraction kit-shortage, Copenhagen, Denmark, March 2020.

Fomsgaard, AS., Rosenstierne, MW. (2020). Eurosurveillance. 25(14), pp: 2000398.

DOI: https://doi.org/10.2807/1560-7917.ES.2020.25.14.2000398

Project: TELE-Vir

Cost-effectiveness analysis of using probiotics, prebiotics, or synbiotics to control Campylobacter in broilers. 

van Wagenberg, CPA., van Horne, P.L.M., van Asseldonk, M.A.P.M. (2020). Poultry Science. 99 (8), pp. 4077- 4084.

DOI: https://doi.org/10.1016/j.psj.2020.05.003

Project: MOMIR

Climatic and topographic tolerance limits of wile boar in Eurasia: implications for their expansion.

Bosch, J., Iglesias, I., Martínez, M., de la Torre, A. (2020). Geography, Environment, Sustainability, 13(1), pp.107-114.

DOI: https://doi.org/10.24057/2071-9388-2019-52

Project: NOVA

A Multi-Scale Epidemic Model of Salmonella infection with Heterogeneous Shedding.

Labarthe, S., Laroche, B., Nguyen, T. N. T., Polizzi, B., Patout, F., Ribot, M., Stegmaier, T. (2020). ESAIM: Proceedings and Surveys, 67, p. 261-284.

DOI: https://doi.org/10.1051/proc/202067015

Project: MOMIR

A multi-center proposal for a fast screening tool in biosecured chicken flocks. Foodborne Campylobacter.

Hoorfar, J., Koláčková, I., Johannessen, GS., Garofolo, G., Marotta, F., Wieczorek, K., Osek, J., Torp, M., Spilsberg, B., Sekse, C., Thornval, NR., Karpíšková, R. (2020). Applied and Environmental Microbiology,

Project: AIRSAMPLE

Extensive antimicrobial resistance mobilization via multicopy plasmid encapsidation mediated by temperate phages.

Rodriguez-Rubio, L., Serna, C., Ares-Arroyo, M., Matamoros, BR., Delgado-Blas, JF., Montero, N., Bernabe-Balas, C., Wedel, EF., Mendez, IS., Muniesa, M., Gonzalez-Zorn, B. (2020). Journal of Antimicrobial Chemotherapy, 75 (11), pp. 3173–3180.

DOI: https://doi.org/10.1093/jac/dkaa311

Project: ARDIG

First report on the occurrence of Listeria monocytogenes ST121 strain in a dolphin brain. 

Sévellec, Y., Torresi, M., Félix, B., Palma, F., Centorotola, G., Bilei, S., Senese, M., Terracciano, G., Leblanc, JC., Pomilio, F., Roussel, S. (2020). Pathogens(10), 802.

DOI: https://doi.org/10.3390/pathogens9100802 

Project: LISTADAPT

Cystic Echinococcosis: Clinical, Immunological, and Biomolecular Evaluation of Patients from Sardinia (Italy).

Santucciu, C., Bonelli, P., Peruzzu, A., Fancellu, A., Marras, V., Carta, A., Mastrandrea, S., Bagella, G., Piseddu, T., Profili, S., Porcu, A., Masala, G. (2020). Pathogens. 9 (11), 907.

DOI: https://doi.org/10.3390/pathogens9110907

Project: MeME

Expression of in vivo biotinylated recombinant antigens SAG1 and SAG2A from Toxoplasma gondii for improved seroepidemiological bead-based multiplex assays.

Klein, S., Stern, D., Seeber, F. (2020). BMC Biotechnology. 2053.

DOI: https://doi.org/10.1186/s12896-020-00646-7

Project: TOXOSOURCES

Reduction of Salmonella Typhimurium cecal colonisation and improvement of intestinal health in broilers supplemented with fermented defatted ‘alperujo’, an olive oil by-product

Rebollada-Merino, A., Ugarte-Ruiz, M., Hernández, M., Miguela-Villoldo, P., Abad, D., Rodríguez-Lázaro, D., de Juan, L., Domínguez, L., Rodríguez-Bertos, A. (2020). Animals. 10 (10), 1931.

DOI: https://doi.org/10.3390/ani10101931

Project: MOMIR

A validated method to identify Echinococcus granulosus sensu lato at species level.

Santolamazza, F., Santoro, A., Possenti, A., Cacciò, S M., Casulli, A. (2020). Infection, Genetics and Evolution. 85, 104575.

DOI: https://doi.org/10.1016/j.meegid.2020.104575

Project: MeME

Bayesian Analysis of Three Methods for Diagnosis of Cystic Echinococcosis in Sheep.

Bonelli , P., Loi, F., Cancedda, MG., Peruzzu, A., Antuofermo, E., Pintore, E., Piseddu, T., Garippa, G., Masalam G. (2020). Pathogens. 9(10), 796.

DOI: https://doi.org/10.3390/pathogens9100796

Project: MeME

Species Detection within the Echinococcus granulosus sensu lato Complex by Novel Probe-Based Real-Time PCRs. 

Maksimov, P., Bergmann, H., Wassermann, M., Romig, T., Gottstein, B., Casulli, A., Conraths, FJ. (2020). Pathogens, 9(10), 791. 

DOI: https://doi.org/10.3390/pathogens9100791

Project: MeME

Dietary supplementation with fermented defatted “alperujo” induces modifications of the intestinal mucosa and cecal microbiota of broiler chickens.

Rebollada-Merino, A., Ugarte-Ruiz, M., Hernández, M., Miguela-Villoldo, P., Abad, D., Cuesta-Álvaro, P., Rodríguez-Lázaro, D., de Juan, L., Domínguez, L., Rodríguez-Bertos, A. (2020).  Poultry Science.

DOI: https://doi.org/10.1016/j.psj.2020.07.015

Project: MOMIR

Gut microbiota composition before infection determines the Salmonella super‐ and low‐shedder phenotypes in chicken.

Kempf, F., Menanteau, P., Rychlik, I., Kubasová, T., Trotereau, J., Virlogeux‐Payant, I., Schaeffer, S., Schouler, C., Drumo, R., Guitton, E., Velge, P. (2020). Microbial Biotechnology. 135), 1611– 1630. 

DOI: https://doi.org/10.1111/1751-7915.13621

Project: MOMIR

Isolation and genetic characterization of Toxoplasma gondii in Spanish sheep flocks.

Fernández-Escobar, M., Calero-Bernal, R., Benavides, J., Regidor-Cerrillo, J., Guerrero-Molina, M. C., Gutiérrez-Expósito, D., Collantes-Fernández, E., Ortega-Mora, L. M. (2020). Parasites and Vectors.

DOI: https://doi.org/10.1186/s13071-020-04275-z

Project: TOXOSOURCES

Fluorescent bead-based serological detection of Toxoplasma gondii infection in chickens.

Fabian, B. T., Hedar, F., Koethe, M., Bangoura, B., Maksimov, P., Conraths, F. J., Villena, I., Aubert, D., Seeber, F., Schares, G. (2020). Parasites and Vectors.

DOI: https://doi.org/10.1186/s13071-020-04244-6

Project: TOXOSOURCES

Veterinary Students Have A Higher Risk Of Contracting Cryptosporidiosis When Calves With High Fecal Cryptosporidium Loads Are Used For Fetotomy Exercises.

Lopez, T., Müller, L., Vestergaard, LS., Christoffersen, M., Andersen, A., Jokelainen, P., Agerholm, JS., Stensvold, CR. (2020). Applied and Environmental Microbiology.

DOI: https://doi.org/10.1128/AEM.01250-20

Project: PARADISE

The One Health European Joint Programme (OHEJP), 2018–2022: an exemplary One Health initiative.

Brown, HL., Passey, JL., Getino, M., Pursley, I., Basu, P., Horton, DL., La Ragione, RM. (2020). Journal of Medical Microbiology, pp 1-3.

DOI: https://doi.org/10.1099/jmm.0.001228

MLST-based genetic relatedness of Campylobacter jejuni isolated from chickens and humans in Poland

Wieczorek, K., Wołkowicz, T., Osek, J. (2020). PLOS ONE, 15(1), e0226238

DOI: https://doi.org/10.1371/journal.pone.0226238

Project: AIRSAMPLE

Effects on Intestinal Mucosal Morphology, Productive Parameters and Microbiota Composition after Supplementation with Fermented Defatted Alperujo (FDA) in Laying Hens

Rebollada-Merino A., Bárcena C., Ugarte-Ruiz M., Porras-González N., Mayoral-Alegre F., Tome-Sánchez I., Domínguez L. and Rodríguez-Bertos A. (2020). Antibiotics, 8(4), pp. 215

DOI: https://doi.org/10.3390/antibiotics8040215

Project: MedVetKlebs

Broad-Spectrum Cephalosporin-Resistant Klebsiella spp. Isolated from Diseased Horses in Austria

Loncaric, I., Rosel, AC., Szostak, MP., Licka, TF., Allerberger, F., Ruppitsch, W., Spergser, J. (2020). Animals, 10(2), pp. 332

DOI: https://doi.org/10.3390/ani10020332

Project: MedVetKlebs

Campylobacter in chicken- Critical parameters for international, multi-centre evaluation of air sampling and detection method

Johannessen, GS., Giuliano Garofolo, G., Di Serafino, G.,Koláčková, I., Karpíšková, R., Wieczorek, K., Osek, J.,  Christensen, J., Torp, M., Hoorfar, J. (2020). Food Microbiology, 90, 1-6

DOI: https://doi.org/10.1016/j.fm.2020.103455

Project: AIRSAMPLE

Evaluation of a commercial exogenous internal process control for diagnostic RNA virus metagenomics from different animal clinical samples

Van Borm, S., Fu, Q., Winand, R., Vanneste, K., Hakhverdyan, M., Höper, D., Vandenbussche, F. (2020). Journal of Virological Methods, 283

DOI: https://doi.org/10.1016/j.jviromet.2020.113916

Project: METASTAVA

Klebsiella pneumoniae carriage in low-income countries: antimicrobial resistance, genomic diversity and risk factors

Huynh, BT., Passet, V., Rakotondrasoa, A.,. Diallo, T., Kerleguer, A., Hennart, M., Lauzanne, A., Herindrainy, P., Seck, A., Bercion, R., Borand, L., Pardos de la Gandara, M., Delarocque-Astagneau, E., Guillemot, D., Vray, M., Garin, B., Collard, JM., Rodrigues, C., Brisse, S. (2020). Gut Microbes, 11(5), pp. 1287-1299

DOI: https://doi.org/10.1080/19490976.2020.1748257

Project: MedVetKlebs

The ZKIR Assay, a Real-Time PCR Method for the Detection of Klebsiella pneumoniae and Closely Related Species in Environmental Samples

Barbier, E., Rodrigues, C., Depret, G., Passet, V., Gal, L., Piveteau, P., Brisse, S. (2020). Applied and Environmental Microbiology, 86(7), pp. e02711-19.

DOI: https://doi.org/10.1128/AEM.02711-19

Project: MedVetKlebs

Stepwise evolution and convergent recombination underlie the global dissemination of carbapenemase-producing Escherichia coli

Patiño-Navarrete, R., Rosinski-Chupin, I., Cabanel, N., Gauthier, L., Takissian, J., Madec, JY., Hamze, M., Bonnin, RA., Naas, T., Glaser, P. (2020). Genome Medicine, 12(10)

DOI: https://doi.org/10.1186/s13073-019-0699-6

Project: ARDIG

Microsatellite Investigations of Multiple Echinococcus granulosus Sensu Stricto Cysts in Single Hosts Reveal Different Patterns of Infection Events between Livestock and Humans

M’rad, S., Oudni-M’rad, M., Bastid, V., Bournez, L., Mosbahi, S., Nouri, A., Babba, H., Grenouillet, F., Boué, F., Umhang, G. (2020). Pathogens, 9(6), pp. 444

DOI: https://doi.org/10.3390/pathogens9060444

Project: MeME

Analysis of COMPASS, a New Comprehensive Plasmid Database Revealed Prevalence of Multireplicon and Extensive Diversity of IncF Plasmids.

Douarre, P E., Mallet, L., Radomski, N., Felten, A., Mistou, M. (2020) Frontiers in Microbiology, 11, pp. 1-15.

DOI: https://doi.org/10.3389/fmicb.2020.00483.

Project: RaDAR

Recognising the substantial burden of neglected pandemics cystic and alveolar echinococcosis.

Casulli, A. (2020) The Lancet, 8 (4): PE470-E471

DOI: https://doi.org/10.3389/fmicb.2020.00483

Project: MeME

2019

Opportunities for Improved Disease Surveillance and Control by Use of Integrated Data on Animal and Human Health.

Houe, H., Nielsen, SS., Nielsen, LR., Ethelberg, S., Mølbak, K. (2020). Frontiers in Veterinary Medicine, 6: 301, pp. 1-8.

DOI: https://doi.org/10.3389/fvets.2019.00301

Project: ORION

An outbreak of monophasic Salmonella Typhimurium associated with raw pork sausage and other pork products, Denmark 2018–19.

Helmuth, IG., Espenhain, L., Ethelberg, S., Jensen, T., Kjeldgaard, J., Litrup, E., Schjørring, S., Müller, L. (2019). Epidemiology and Infection, 147, pp. e315.

DOI: https://doi.org/10.1017/S0950268819002073

Project: NOVA

Whole genome sequencing reveals resemblance between ESBL-producing and carbapenem resistant Klebsiella pneumoniae isolates from Austrian rivers and clinical isolates from hospitals.

Lepuschitz, S., Schill, S., Stoeger, A., Pekard-Amenitsch, S., Huhulescu, S., Inreiter, N., Hartl, R., Kerschner, H., Sorschag, S., Springer, B., Brisse, S., Allerberger, F., Mach, RL., Ruppitsch, W. (2019). Science of the Total Environment, 662, pp.  227-235.

DOI: https://doi.org/10.1016/j.scitotenv.2019.01.179

Project: MedVetKlebs

Antimicrobial Usages and Antimicrobial Resistance in Commensal Escherichia coli From Veal Calves in France: Evolution During the Fattening Process. 

Gay, E., Bour, M., Cazeau, G., Jarrige, N., Martineau, C., Madec, JY., Haenni, M. (2019). Frontiers in Microbiology, 10, pp. 792.

DOI: https://doi.org/10.3389/fmicb.2019.00792

Project: ARDIG

The shufflon of IncI1 plasmids is rearranged constantly during different growth conditions

Brouwer, MSM., Jurburg, SD., Harders, F., Kant, A., Mevius, DJ., Roberts, AP., Bossers, A. (2019). Plasmid, 120, pp. 51-55

DOI: https://doi.org/10.1016/j.plasmid.2019.03.003

Project: ARDIG

Description of Klebsiella spallanzanii sp. nov. and of Klebsiella pasteurii sp. nov.

Merla C, Rodrigues C, Passet V, Corbella M, Thorpe H A, Kallonen T V S, Zong Z, Marone P, Bandi C, Sassera D, Corander J, Feil E J and Brisse S. (2019). Frontiers in Microbiology

DOI: https://doi.org/10.3389/fmicb.2019.02360

Project: MedVetKlebs

Identifying emerging trends in antimicrobial resistance using Salmonella surveillance data in poultry in Spain

Alvarez J., Lopez G., Muellner P., de Frutos C., Ahlstrom C., Serrano T., Moreno MA., Duran M., Saez JL., Dominguez L., Ugarte-Ruiz M. (2019). Transboundary and Emerging Diseases, 67(1), pp. 250-262

DOI: https://doi.org/10.1111/tbed.13346

Project: NOVA

Monitoring Antimicrobial Resistance and Drug Usage in the Human and Livestock Sector and Foodborne Antimicrobial Resistance in Six European Countries.

Mesa Varona, O., Chaintarli, K., Muller-Pebody, B., Anjum, MF., Eckmanns, T., Norström, M., Boone, I. (2019). Dovepress, 13, pp. 957-993

DOI: https://doi.org/10.2147/IDR.S237038

Project: ARDIG

Salmonella Surveillance Systems in Swine and Humans in Spain: A Review.

Marta Martínez-Avilés, Macarena Garrido-Estepa, Julio Álvarez, Ana de la Torre. (2019). Veterinary Sciences. 6, 20

DOI:10.3390/vetsci6010020

Project: NOVA

Field samplings of Ixodes ricinus ticks from a tick-borne encephalitis virus micro-focus in Northern Zealand, Denmark.

Petersen A, Rosenstierne MW, Rasmussen M, Fuursted K, Nielsen HV, O’Brien Andersen L, Bødker R, Fomsgaard A. (2019) Ticks and Tick Borne Disease, 10(5):1028-1032.

DOI: 10.1016/j.ttbdis.2019.05.005.

Project: MAD-Vir

Attributable sources of community-acquired carriage of Escherichia coli containing β-lactam antibiotic resistance genes: a population-based modelling study.

Mughini-Gras L, Dorado-García A, van Duijkeren E, van den Bunt G, Dierikx CM, Bonten MJM, Bootsma MCJ, Schmitt H, Hald T, Evers EG, de Koeijer A, van Pelt W, Franz E, Mevius DJ, Heederik DJJ; ESBL  Consortium. (2019) Lancet Planetary Health. 3(8):e357-e369.

DOI: 10.1016/S2542-5196(19)30130-5

Project: RaDAR

List of new names and new combinations previously effectively, but not validly, published.

Oren and Garrity. (2019) International Journal of Systematic and Evolutionary Microbiology, 69:2627–2629

DOI:DOI 10.1099/ijsem.0.003624

Project: MedVetKlebs

Outbreak of Yersinia bactin-producing Klebsiella pneumoniae in a Neonatal Intensive Care Unit

Wisgrill L, Lepuschitz S, Blaschitz M, Rittenschober-Böhm J, Diab-El Schahawi M, Schubert S, et al. (2019) The Pediatric Infectious Disease Journal, 38:638-42

DOI: https://doi.org/10.1097/INF.0000000000002258

Project: MedVetKlebs

Toxoplasma gondii infection and toxoplasmosis in farm animals: Risk factors and economic impact

Stelzer, S., Basso, W., Benavides Silván, J., Ortega-Mora, L.M., Maksimov, P., Gethmann, J., Conraths, F.J.,  Schares, G. (2019). . Food and Waterborne Parasitology, 12, pp. e00037.

DOI: http://doi.org/10.1016/j.fawpar.2019.e00037

Project: ORION

Description of Klebsiella africanensis sp. nov., Klebsiella variicola subsp. tropicalensis subsp. nov. and Klebsiella variicola subsp. variicola subsp. nov.

Rodrigues, C., Passet V., Rakotondrasoa, A., Diallo, TA., Criscuolo, A., Brisse, S. (2019) Research in Microbiology.

DOI: https://doi.org/10.1016/j.resmic.2019.02.003

Project: MedVetKlebs

2018

Non-Typhi, non-Paratyphi Salmonella-related hospitalisations in Spain: trends, clinical aspects, risk factors for worse prognosis and hospital costs.

Garrido-Estepa, M., Latasa, P., Ordóñez-León, G.Y. et al. (2018) European Journal of Clinical Microbiology and Infectious Disease.

DOI: 10.1007/s10096-018-3433-1

ISSN: 1435-4373

Project: NOVA

Analysis of consumer food purchase data used for outbreak investigations, a review.

Møller Frederik T, Mølbak Kåre, Ethelberg Steen. (2018) Euro Surveill.

DOI: 10.2807/1560-7917.ES.2018.23.24.1700503

Project: NOVA

Population Genetic Structure of Listeria monocytogenes Strains Isolated From the Pig and Pork Production Chain in France.

Félix B, Feurer C, Maillet A, Guillier L, Boscher E, Kerouanton A, Denis M, Roussel S. (2018). Front. Microbiol.

DOI: 10.3389/fmicb.2018.00684

Project: LISTADAPT

Veterinarios y antibióticos: destinados a entenderse.

Moreno MA., Florez-Cuadrado D., Ugarte-Ruiz M. and Dominguez L. (2018).Profesión Veterinaria. Asis,

ISBN: 2253-7244. 2018.

Project: MoMIR-PPC

Antimicrobial Resistance in the Food Chain in the European Union.

Florez-Cuadrado D., Moreno MA., Ugarte-Ruiz M. and Dominguez L. (2018). Advances in Food and Nutrition Research. Elsevier

ISBN: 9780128139776. 2018

DOI: 10.1016/bs.afnr.2018.04.004

Project: MoMIR-PPC

Role of systemic infection, cross contaminations and super-shedders in Salmonella carrier state in chicken.

Menanteau P, Kempf F, Trotereau J, Virlogeux-Payant I, Guitton E, Dalifard J, Gabriel I, Rychlik I, and Velge P. (2018). Environmental Microbiology.

DOI: 10.1111/1462-2920.14294

Project: MoMIR-PPC

Identification of Klebsiella pneumoniae, Klebsiella quasipneumoniae, Klebsiella variicola and related phylogroups by MALDI-TOF Mass Spectrometry.

Rodrigues C, Passet V, Rakotondrasoa A, Brisse S (2018). Front. Microbiol. 9:3000

DOI: 10.3389/fmicb.2018.03000

Project: MedVetKlebs