Publications

2023

Intersectoral collaboration in a One Health approach: Lessons learned from a country-level simulation exercise

Manageiro, V., Caria, A., Furtado, C., Botelho, A., Oleastro, M., Cavaco Gonçalves, S. (2023). One Health. 100649. In press, pre-proof version.

DOI: https://doi.org/10.1016/j.onehlt.2023.100649

Project: OHEJP SimEx

Risk Factors for Salmonella Detection in Commercial Layer Flocks in Spain. 

Samper-Cativiela, C., Prieto, M.E., Collado, S., De Frutos, C., Branscum, A.J., Saez, J.L., Alvarez, J. (2023). Animals. 13(20), 3181.

DOI: https://doi.org/10.3390/ani13203181

Project: ADONIS

Introduction talks of the One Health EJP (European Joint Programme) final meeting September 11; 2023 Paris.

Imberechts, H., Callegari, A., Behaeghel, I., & Jestin, A. (2023). Bulletin de l’Académie Vétérinaire de France (Bulletin of the Veterinary Academy of France). 71055.

DOI: https://zenodo.org/records/10017691

& https://doi.org/10.3406/bavf.2023.71055

Project: WP1

ReporTree: a surveillance-oriented tool to strengthen the linkage between pathogen genetic clusters and epidemiological data.

Mixão, V., Pinto, M., Sobral, D., Di Pasquale, A., Gomes, J. P., & Borges, V. (2023). Genome Medicine. 15, 43.

DOI: https://doi.org/10.1186/s13073-023-01196-1

Project: BeONE

Assessing potential determinants of the stagnating trend in Salmonella Enteritidis human infections in Europe and options for intervention: A multi-criteria decision analysis. 

Chanamé Pinedo, L., Van Goethem, N., Mallioris, P., Pacholewicz, E., Pijnacker, R., Franz, E., & Mughini-Gras, L. (2023). One Health. 16, 100535.

DOI: https://doi.org/10.1016/j.onehlt.2023.100535

Project: ADONIS

Environmental Sampling Methods for Detection of Salmonella Infections in Laying Hens: A Systematic Review and Meta-Analysis.

Pacholewicz, E., Wisselink, H.J., Koene, M.G.J., van der Most, M., Gonzales, J.L. (2023). Microorganisms. 11, 2100.

DOI: https://doi.org/10.3390/microorganisms11082100

Project: ADONIS

Salmonella assessment along the Spanish food chain: Likelihood of Salmonella occurrence in poultry and pig products is maintained across the food chain stages.

Rodríguez, A., Sacristán, C., Iglesias, I. & de la Torre, A. (2023). Zoonoses and Public Health. 0019.

DOI: https://doi.org/10.1111/zph.13076

Project: MATRIX

The emergence of Brucella canis as a public health threat in Europe: what we know, and what we need to learn.

Djokic, V., Freddi, L., de Massis, F., Lahti, E., Esker, M. V. D., Whatmore, A., Haughey, A., Ferreira, A. C., Garofolo, G., Melzer, F., Sacchini, F., Koets, A., Wyllie, S., Fontbonne, A., Girault, G., Vicente, A. F., McGiven, J., & Ponsart, C. (2023). Emerging microbes & infections. 2249126. Advance online publication.

DOI: https://doi.org/10.1080/22221751.2023.2249126

Project: IDEMBRU

Comparison of 6 DNA extraction methods for isolation of high yield of high molecular weight DNA suitable for shotgun metagenomics Nanopore sequencing to detect bacteria.

Gand, M., Bloemen, B., Vanneste, K., Roosens, N.H.C., & De Keersmaecker, S.C.J. (2023). BMC Genomics. 24, 438.

DOI: https://doi.org/10.1186/s12864-023-09537-5

Project: FARMED

Increased rat-borne zoonotic disease hazard in greener urban areas. 

de Cock, M. P., de Vries, A., Fonville, M., Esser, H. J., Mehl, C., Ulrich, R. G., Joeres, M., Hoffmann, D., Eisenberg, T., Schmidt, K., Hulst, M., van der Poel, W. H. M., Sprong, H., & Maas, M. (2023). The Science of the Total Environment. 896, 165069. Advance online publication.

DOI: https://doi.org/10.1016/j.scitotenv.2023.165069

Project: DESIRE

The values and risks of an Intergovernmental Panel for One Health to strengthen pandemic prevention, preparedness, and response.

Hobeika, A., Tibault Stauffer, M. H., Dub, T., van Bortel, W., Beniston, M., Bukachi, S., Burci, G. L., Crump, L., Markotter, W., Pasquale Sepe, L. P., Placella, E., Roche, B., Thiongane, O., Wang, Z., Guérin, F. & van Kleef, E. (2023). The Lancet Global Health, 11 (8), e1301-e1307.

DOI: https://doi.org/10.1016/S2214-109X(23)00246-2

WP5

Cystic echinococcosis in Iceland: A brief history and genetic analysis of a 46-year-old Echinococcus isolate collected prior to the eradication of this zoonotic disease.

Saarma, U., Skirnisson, K., Björnsdottir, T., Laurimäe, T., & Kinkar, L. (2023). Parasitology. 150(7), 638-643.

DOI: https://doi.org/10.1017/S0031182023000355

Project: MEmE

Exploring the genetic diversity of genotypes G8 and G10 of the Echinococcus canadensis cluster in Europe based on complete mitochondrial genomes (13 550–13 552 bp).

Laurimäe, T., Kinkar, L., Moks, E., Bagrade, G., & Saarma, U. (2023). Parasitology. 150(7), 631-637.

DOI: https://doi.org/10.1017/S0031182023000331

Project: MEmE

Neglected Tropical Diseases in Italy: introducing IN-NTD, the Italian network for NTDs.

Casulli, A., Antinori, S., Bartoloni, A., D’Amelio, S., Gabrielli, A. F., Gazzoli, G., Rinaldi, L., Bruschi, F., & IN-NTD network (2023). Parasitology. 1–7. Advance online publication.

DOI: https://doi.org/10.1017/S0031182023000422

Project: MEmE

Inactivation of Toxoplasma gondii in dry sausage and processed pork, and quantification of the pathogen in pig tissues prior to production.

Dámek, F., Fremaux, B., Aubert, D., Thoumire, S., Delsart, M., Martin, J. L., Vuillermet, S., Opsteegh, M., Jokelainen, P., Le Roux, D., Boireau, P., Villena, I., & Blaga, R. (2023). Food and Waterborne Parasitology. 31, e00194.

DOI: https://doi.org/10.1016/j.fawpar.2023.e00194

Project: ToxSauQMRA

Microbiological sampling and analyses in the food business operators’ HACCP based self-control programmes.

Aybar Espinoza, M. S., Flink, C., Boisen, N., Scheutz, F. and Käsbohrer, A. (2023). Frontiers in Food Science and Technology. 3, 1110359.

DOI: https://doi.org/10.3389/frfst.2023.1110359

Project: OH-HARMONY-CAP

Molecular Investigations of Two First Brucella suis Biovar 2 Infections Cases in French Dogs. 

Girault, G., Djokic, V., Petot-Bottin, F., Perrot, L., Thibaut, B., Sébastien, H., Vicente, A. F., Ponsart, C., Freddi, L. (2023). Pathogens. 12(6), 792.

DOI: https://doi.org/10.3390/pathogens12060792

Project: IDEMBRU

A multi-country One Health foodborne outbreak simulation exercise: cross-sectoral cooperation, data sharing and communication.

Alves, F., Artursson, K., Bloch, J., Brisabois, A., Imberechts, H., Jokelainen, P., La Ragione, R., Lindblad, M., Litzell Forss, R., Marston, D. A., Parvizi, O., Tuominen, L. & Omazic, A. (2023). Frontiers in Public Health. 11, 1121522.

DOI: https://www.frontiersin.org/articles/10.3389/fpubh.2023.1121522

Project: OHEJP SimEx

Increased antimicrobial resistance among non-typhoidal salmonella infections in international travellers returning to the Netherlands

Chanamé-Pinedo, L., Franz, E., Beld, M., Veldman, K., Pijnacker, R., & Mughini-Gras, L. (2023). Journal of Travel Medicine. taad079.

DOI: https://doi.org/10.1093/jtm/taad079

Project: ADONIS

Clonal relation between Salmonella enterica subspecies enterica serovar Dublin strains of bovine and food origin in Germany.

Linde, J., Szabo, I., Tausch, S.H., Deneke, C. and Methner, U. (2023). Frontiers in Veterinary Science. 10, 1081611.

DOI: https://www.frontiersin.org/articles/10.3389/fvets.2023.1081611

Project: BeONE

Defining genomic epidemiology thresholds for common-source bacterial outbreaks: a modelling study.

Duval, A., Opatowski, L., & Brisse, S. (2023). The Lancet Microbe. 4(5), E349-E357.

DOI: https://doi.org/10.1016/S2666-5247(22)00380-9 

Project: MedVetKlebs

A framework for the design, implementation, and evaluation of output based surveillance systems against zoonotic threats.

Rivers, S., Kochanowski, M., Stolarek, A., Ziętek-Barszcz, A., Horigan, V., Kent, A.J. & Dewar, R. (2023). Frontiers in Public Health. 11, 1129776.

DOI: https://doi.org/10.3389/fpubh.2023.1129776

Project: MATRIX

Mapping food surveillance chains through different sectors.

Amato, L., Benedetti, G., Di Giuseppe, P., Hénaux, V., Lailler, R., Nordeng, Z., Scharffenberg, T. A. Z., Skjerdal, T. & Cito, F. (2023). Frontiers in Public Health. 11, 1129851.

DOI: https://doi.org/10.3389/fpubh.2023.1129851

Project: MATRIX

Cross-sectional study of hepatitis E virus (HEV) circulation in Italian pig farms.

Ianiro, G., Pavoni, E., Aprea, G., Romantini, R., Alborali, G. L., D’Angelantonio, D., Garofolo, G., Scattolini, S., De Sabato, L., Magistrali, C. F., Burow, E., Ostanello, F., Smith, R. P., Di Bartolo, I. (2023). Frontiers in Veterinary Science. 10, 1136225.

DOI: https://doi.org/10.3389/fvets.2023.1136225

Project: BIOPIGEE

Evidence of structural rearrangements in ESBL-positive pESI(like) megaplasmids of S. Infantis.

Alba, P., Carfora, B., Feltrin, F., Lurescia, M,, Diaconu, E.L., Cordaro, G., Dell’Aira, E., Marani, I., Giacomi, A., Franco, A., Battisti, A. (2023). FEMS Microbiology Letters. 370, fnad014.

DOI: https://doi.org/10.1093/femsle/fnad014

Project: FULL-FORCE

Genomic Epidemiology of Corynebacterium diphtheriae in New Caledonia.

Tessier, E., Hennart, M., Badell, E., Passet, V., Toubiana, J., Biron, A., Gourinat, A. C., Merlet, A., Colot, J., & Brisse, S. (2023). Microbiology spectrum11(3), e0461622.

DOI: https://doi.org/10.1128/spectrum.04616-22

Project: Codes4strains

Multidrug-resistant toxigenic Corynebacterium diphtheriae sublineage 453 with two novel resistance genomic islands.

Arcari, G., Hennart, M., Badell, E., & Brisse, S. (2023). Microbial genomics. 9(1), mgen000923.

DOI: https://doi.org/10.1099/mgen.0.000923

Project: Codes4strains

Healthcare-associated foodborne outbreaks in high- income countries: a literature review and surveillance study, 16 OECD countries, 2001 to 2019.

Boone, I., Rosner, B., Lachmann, R., D’Errico, M. L., Iannetti, L., Van der Stede, Y., Boelaert, F., Ethelberg, S., Eckmanns, T., Stark, K., Haller, S., & Wilking, H. (2021). Eurosurveillance. 26, 2001278.

DOI: https://doi.org/10.2807/1560-7917.ES.2021.26.41.2001278

Project: NOVA

Catering of high-risk foods and potential of stored food menu data for timely outbreak investigations in healthcare facilities, Italy and Germany. 

Boone, I., D’Errico, M. L., Iannetti, L., Scavia, G., Tozzoli, R., Ethelberg, S., Eckmanns, T., Stark, K., Wilking, H., & Haller, S. (2023). Epidemiology and infection. 151, e61.

DOI: https://doi.org/10.1017/S0950268823000468

Project: NOVA

Corynebacteria of the diphtheriae Species Complex in Companion Animals: Clinical and Microbiological Characterization of 64 Cases from France. 

Museux, K., Arcari, G., Rodrigo, G., Hennart, M., Badell, E., Toubiana, J., & Brisse, S. (2023). Microbiology spectrum. e0000623. Advance online publication.

DOI: https://doi.org/10.1128/spectrum.00006-23

Project: Codes4strains

Evaluation of Biofilm Cultivation Models for Efficacy Testing of Disinfectants against Salmonella Typhimurium Biofilms. 

Richter, A. M., Konrat, K., Osland, A.M., Brook, E., Oastler, C., Vestby, L.K., Gosling, R.J., Nesse. L.L., Arvand, M. (2023). Microorganisms. 11(3), 761.

DOI: https://doi.org/10.3390/microorganisms11030761

Project: BIOPIGEE

Building an International One Health Strain Level Database to Characterise the Epidemiology of AMR Threats: ESBL—AmpC Producing E. coli as An Example—Challenges and Perspectives. 

Perestrelo, S., Amaro, A., Brouwer, M.S.M., Clemente, L., Ribeiro Duarte, A.S., Kaesbohrer, A., Karpíšková, R., Lopez-Chavarrias, V., Morris, D., Prendergast, D., Pista, A., Silveira, L., Skarżyńska, M., Slowey, R., Veldman, K.T., Zając, M., Burgess, C., Alvarez, J. (2023). Antibiotics. 12(3), 552.

DOI: https://doi.org/10.3390/antibiotics12030552

Project: DiSCoVeR

A model using an inter-sectorial data integration process indicates that reducing Campylobacter cross-contamination at slaughter mitigates the risk of human campylobacteriosis effectively.

Foddai, A., Nauta, M., Ellis-Iversen, J. (2023). Microbial Risk Analysis. 23, 100248.

DOI: https://doi.org/10.1016/j.mran.2023.100248

Project: ORION

Prevalence and molecular characterization of Toxoplasma gondii in different types of poultry in Greece, associated risk factors and co-existence with Eimeria spp.

Andreopoulou, M., Schares, G., Koethe, M., Chaligiannis, I.,Maksimov, P., Joeres, M., Cardron, G., Goroll, T., Sotiraki, S., Daugschies, A. & Bangoura, B.  (2023). Parasitology Research. 122, 97–111.

DOI: https://doi.org/10.1007/s00436-022-07701-6

Project: TOXOSOURCES

When COVID-19 sits on people’s laps: A systematic review of SARS-CoV-2 infection prevalence in household dogs and cats. 

Guo, R., Wolff, C., Prada, J., & Mughini-Gras, L. (2023). One Health. 16, 100497.

DOI: https://doi.org/10.1016/j.onehlt.2023.100497

Project: COVRIN

Evaluation of Non-Invasive Sampling Methods for Detection of Hepatitis E Virus Infected Pigs in Pens.

Meester, M., Rademaker, A., Bouwknegt, M., Hakze-van der Honing, R.W., Stegeman, A., van der Poel, W.H.M. & Tobias, T.J. (2023). Microorganisms. 11(2), 500.

DOI: https://doi.org/10.3390/microorganisms11020500

Project: BIOPIGEE

Rapid culture-independent loop-mediated isothermal amplification detection of antimicrobial resistance markers from environmental water samples. 

Hassan, M. M., van Vliet, A. H. M., Higgins, O., Burke, L. P., Chueiri, A., O’Connor, L., Morris, D., Smith, T. J., & La Ragione, R. M. (2023). Microbial biotechnology, 10.1111/1751-7915.14227. Advance online publication.

DOI: https://doi.org/10.1111/1751-7915.14227

Project: WORLDCOM

Inflammatory Responses Induced by the Monophasic Variant of Salmonella Typhimurium in Pigs Play a Role in the High Shedder Phenotype and Fecal Microbiota Composition.

Kempf, F., Cordoni, G., Chaussé, A. M., Drumo, R., Brown, H., Horton, D. L., Paboeuf, F., Denis, M., Velge, P., La Ragione, R., & Kerouanton, A. (2023). mSystems. e0085222. Advance online publication.

DOI: https://doi.org/10.1128/msystems.00852-22

Project: MoMIR-PPC

Evaluating the impact of heavy metals on antimicrobial resistance in the primary food production environment: A scoping review.

Anedda, E., Farrell, M. L., Morris, D., & Burgess, C. M. (2023). Environmental Pollution. 320, 121035.

DOI: https://doi.org/10.1016/j.envpol.2023.121035

Project: HME-AMR

Genotypic and Phenotypic Characterization of Pathogenic Escherichia coli, Salmonella spp., and Campylobacter spp., in Free-Living Birds in Mainland Portugal.

Batista, R., Saraiva, M., Lopes, T., Silveira, L., Coelho, A., Furtado, R., Castro, R., Correia, C. B., Rodrigues, D., Henriques, P., Lóio, S., Soeiro, V., da Costa P. M., Oleastro, M., Pista, A. (2023). International Journal of Environmental Research and Public Health. 20(1), 223.

DOI: https://doi.org/10.3390/ijerph20010223

Project: DiSCoVeR

Clostridioides difficile in South American Camelids in Germany: First Insights into Molecular and Genetic Characteristics and Antimicrobial Resistance. 

Dost, I., Abdel-Glil, M., Schmoock, G., Menge, C., Berens, C., González-Santamarina, B., Wiegand, E., Neubauer, H., Schwarz, S., Seyboldt, C. (2023). Antibiotics. 12(1), 86.

DOI:  https://doi.org/10.3390/antibiotics12010086

Project: FED-AMR

Mapping the evidence of the effects of environmental factors on the prevalence of antibiotic resistance in the non-built environment: Protocol for a systematic evidence map.

Gardner, B., Betson, M., Cabal Rosel, A., Caniça, M., Chambers, M. A., Contadini, F. M., Gonzalez Villeta, L. C., M. M., La Ragione, R. M., de Menezes, A., Messina, D., Nichols, G., Olivença, D. V., Phalkey, R., Prada, J. M., Ruppitsch, W., Santorelli, L. A., SelemetasN., Tharmakulasingam, M., van Vliet, A. H. M.,  Woegerbauer, M., Deza-Cruz, I., Lo Iacono, G. (2023). Environment International. 171, 107707.

DOI: ​https://doi.org/10.1016/j.envint.2022.107707

Project: FED-AMR

Features of Mycobacterium bovis Complete Genomes Belonging to 5 Different Lineages.

Charles, C., Conde, C., Vorimore, F., Cochard, T., Michelet, L., Boschiroli, M. L., Biet, F. (2023). Microorganisms. 11(1), 177.

DOI: https://doi.org/10.3390/microorganisms11010177

Project: PEMbo

Molecular epidemiology of Clostridioides difficile in companion animals: Genetic overlap with human strains and public health concerns.

Alves, F., Castro, R., Pinto, M., Nunes, A., Pomba, C., Oliveira, M., Silveira, L., Gomes, J. P., Oleastro, M. (2023). Frontiers in Public Health. 10, 1070258.

DOI: https://doi.org/10.3389/fpubh.2022.1070258

Project: FED-AMR

Epizootic Haemorrhagic Disease Virus Serotype 8 in Tunisia, 2021.

Sghaier, S., Sailleau, C., Marcacci, M., Thabet, S., Curini, V., Hassine, T. B., Teodori, L., Portanti, O., Hammami, S., Jurisic, L., Spedicato, M., Postic, L., Gazani, I,, Osman, R. B., Zientara, S., Bréard, E., Calistri, P., Richt, J. A., Holmes, E. C., Savini, G., Di Giallonardo, F., Lorusso, A. (2023). Viruses. 15(1), 16.

DOI: https://doi.org/10.3390/v15010016

Project: TELE-Vir

Aptamer-Based Technologies for Parasite Detection.

Brosseau, N. E., Vallée, I., Mayer-Scholl, A., Ndao, M., Karadjian, G. (2023). Sensors.  23(2), 562.

DOI: https://doi.org/10.3390/s23020562

Project: AptaTrich

Translating One Health knowledge across different institutional and political contexts in Europe.

Humboldt-Dachroeden, S. (2023). One Health Outlook. 5, 1 .

DOI: https://doi.org/10.1186/s42522-022-00074-x

Project: SUSTAIN

Systematic Review and Modelling of Age-Dependent Prevalence of Toxoplasma gondii in Livestock, Wildlife and Felids in Europe. 

Dámek, F., Swart, A., Waap, H., Jokelainen, P., Le Roux, D., Deksne, G., Deng, H., Schares, G., Lundén, A., Álvarez-García, G., Betson, M., Davidson, R. K., Györke, A., Antolová, D., Hurníková, Z., Wisselink, H. J., Sroka, J., van der Giessen, J. W. B., Blaga, R., Opsteegh, M. (2023). Pathogens. 12(1), 97.

DOI: https://doi.org/10.3390/pathogens12010097

Project: ToxSauQMRA

 

2022

Optimized Lambda Exonuclease Digestion or Purification Using Streptavidin-Coated Beads: Which One Is Best for Successful DNA Aptamer Selection?

Le Dortz, L.L., Rouxel, C., Leroy, Q., Brosseau, N., Boulouis, H-J, Haddad, N., Lagrée, A-C., Deshuillers, P.L. (2022). Methods and Protocols. 5(6), 89.

DOI: https://doi.org/10.3390/mps5060089

Project: AptaTrich

Canine brucellosis due to Brucella canis: description of the disease and control measures.

De Massis, F., Sacchini, F., Petrini, A., Bellucci, F., Perilli, M., Garofolo, G., Savini, G., & Tittarelli, M. (2022). Veterinaria Italiana. 58(1), 5–23.

DOI: https://doi.org/10.12834/VetIt.2561.16874.1

Project: IDEMBRU

New genetic biomarkers to differentiate non-pathogenic from clinically relevant Bacillus cereus strains. 

Kavanaugh, D. W., Glasset, B., Dervyn, R., Guérin, C., Plancade, S., Herbin, S., Brisabois, A., Nicolas, P., & Ramarao, N. (2022). Clinical microbiology and infection: the official publication of the European Society of Clinical Microbiology and Infectious Diseases. 28(1), 137.e1–137.e8.

DOI: https://doi.org/10.1016/j.cmi.2021.05.035

Project: TOX-detect

Airborne spores’ dissemination of a swine associated Clostridioides difficile clone.

Alves, F., Cano, M., Brondani, G., Nunes, A., & Oleastro, M. (2022). Anaerobe. 78, 102651.

DOI: https://doi.org/10.1016/j.anaerobe.2022.102651

Project: FED-AMR

Multidirectional dynamic model for the spread of extended-spectrum-β-lactamase-producing Escherichia coli in the Netherlands.

de Freitas Costa, E., Hagenaars, T. J., Dame-Korevaar, A., Brouwer, M. S. M. & de Vos, C. J. (2022). Microbial Risk Analysis. 22, 100230.

DOI: https://doi.org/10.1016/j.mran.2022.100230

Project: DiSCoVeR

Sources and trends of human salmonellosis in Europe, 2015–2019: An analysis of outbreak data.

Chanamé Pinedo, L., Mughini-Gras, L., Franz, E., Hald, T., Pires, S. M. (2022). International Journal of Food Microbiology. 379, 109850.

DOI: https://doi.org/10.1016/j.ijfoodmicro.2022.109850

Project: DiSCoVeR

The Heat Is On: Modelling the Persistence of ESBL-Producing E. coli in Blue Mussels under Meal Preparation.

Kausrud, K., Skjerdal, T., Johannessen, G. S., Ilag, H. K., Norström, M. (2022). Foods. 12(1), 14.

DOI: https://doi.org/10.3390%2Ffoods12010014

Project: RaDAR

Estimating the likelihood of ESBL-producing E. coli carriage in slaughter-aged pigs following bacterial introduction onto a farm: A multiscale risk assessment.

McCarthy, C., Viel, A., Gavin, C., Sanders, P., Simons, R. R. L. (2022). Microbial Risk Analysis. 20, 100185.

DOI: https://doi.org/10.1016/j.mran.2021.100185

Project: RaDAR

Transmission routes of antibiotic resistant bacteria: a systematic review.

Godijk, N. G., Bootsma, M. C. J., Bonten, M. J. M. (2022). BMC Infectious Disease. 22(1), 482.

DOI: https://doi.org/10.1186%2Fs12879-022-07360-z

Project: RaDAR

Metagenomic Characterization of Multiple Genetically Modified Bacillus Contaminations in Commercial Microbial Fermentation Products. 

D’aes, J., Fraiture, M-A., Bogaerts, B., De Keersmaecker, S. C. J., Roosens, N. H. C. J., Vanneste, K. (2022). Life. 12(12),1971.

DOI: https://doi.org/10.3390/life12121971

Project: FARMED

Improvement of field deployable metagenomics virus detection by a simple pretreatment method.

Fomsgaard, A., Rasmussen, M., Spiess, K., Fomsgaard, A., Graham, B., Fonager, J. (2022). Journal of Clinical Virology Plus. 2(4), 100120.

DOI: https://doi.org/10.1016/j.jcvp.2022.100120

Project: TELE-Vir

Phylogenomic characterization and signs of microevolution in the 2022 multi-country outbreak of monkeypox virus.

Isidro, J., Borges, V., Pinto, M., Sobral, D., Santos, J. D., Nunes, A., Mixão, V., Ferreira, R., Santos, D., Duarte, S., Vieira, L., Borrego, M. J., Núncio, S., Lopes de Carvalho, I., Pelerito, A., Cordeiro, R., Gomes, J. P. (2022). Nature Medicine. 28, 1569–1572.

DOI: https://doi.org/10.1038/s41591-022-01907-y

Project: TELE-Vir

Extensive testing of a multi-locus sequence typing scheme for Giardia duodenalis assemblage A confirms its good discriminatory power. 

Klotz, C., Sannella, A.R., Weisz, F., Chaudhry, U., Sroka, J., Tůmová, P., Nohýnková, E., Ignatius, R., Aebischer, T., Betson, M., Troell, K. & Cacciò, S. (2022). Parasites Vectors. 15, 489.

DOI: https://doi.org/10.1186/s13071-022-05615-x

Project: PARADISE

Amplicon-based next-generation sequencing of eukaryotic nuclear ribosomal genes (metabarcoding) for the detection of single-celled parasites in human faecal samples. 

Chihi, A., O’Brien Andersen, L., Aoun, K., Bouratbine, A., & Stensvold, C. R. (2022). Parasite epidemiology and control. 17, e00242.

DOI: https://doi.org/10.1016/j.parepi.2022.e00242

Project: PARADISE

Environmental factors associated with the prevalence of ESBL/AmpC-producing Escherichia coli in wild boar (Sus scrofa).

Günther, T., Kramer-Schadt, S., Fuhrmann, M., & Belik, V. (2022). Frontiers in veterinary science. 9, 980554.

DOI: https://doi.org/10.3389/fvets.2022.980554

Project: ORION

One Health Consensus Report Annotation Checklist (OH-CRAC): A cross-sector checklist to support harmonized annotation of surveillance data in reports.

Lopez de Abechuco, E., Dórea, F., Buschhardt, T., Scaccia, N., Günther, T., Foddai, A., Dups-Bergmann, J., & Filter, M. (2022). Zoonoses and public health. 69(6), 606–614.

DOI: https://doi.org/10.1111/zph.12947

Project: ORION

Risk-based control of Campylobacter spp. in broiler farms and slaughtered flocks to mitigate risk of human campylobacteriosis – A One Health approach.

Foddai A., Nauta M. and Ellis-Iversen J. (2022) Microbial Risk Analysis, 100190, ISSN 2352-3522.

DOI: https://doi.org/10.1016/j.mran.2021.100190

Project: ORION

Taking account of genomics in quantitative microbial risk assessment: what methods? what issues?

Guillier, L., Palma, F., Fritsch, L. (2022). Current Opinion in Food Science. 48, 100922.

DOI: https://doi.org/10.1016/j.cofs.2022.100922

Project: CARE

Characterizing Antimicrobial Resistance in Clinically Relevant Bacteria Isolated at the Human/Animal/Environment Interface Using Whole-Genome Sequencing in Austria.

Cabal, A., Rab, G., Daza-Prieto, B., Stöger, A., Peischl, N., Chakeri, A., Mo, S.S., Bock, H., Fuchs, K., Sucher, J., Rathammer, K,, Hasenberger. P,, Stadtbauer. S,, Caniça. M,, Strauß. P,, Allerberger. F,, Wögerbauer. M,, Ruppitsch. W. (2022). International Journal of Molecular Sciences. 23(19), 11276.

DOI: https://doi.org/10.3390/ijms231911276

Project: FED-AMR

Super Shedding in Enteric Pathogens: A Review. 

Kempf, F., La Ragione, R., Chirullo, B., Schouler, C., & Velge, P. (2022). Microorganisms. 10(11), 2101.

DOI: https://doi.org/10.3390/microorganisms10112101

Project: MoMIR-PPC

EPI-Net One Health reporting guideline for antimicrobial consumption and resistance surveillance data: a Delphi approach.

Rajendran, N. B., Arieti, F., Mena-Benítez, C. A., Galia, L., Tebon, M., Alvarez, J., Gladstone, B. P., Collineau, L., De Angelis, G., Duro, R., Gaze, W., Göpel, S., Kanj, S. S., Käsbohrer, A., Limmathurotsakul, D., de Abechuco, E. L., Mazzolini, E., Mutters, N., T., Pezzani, M. D.,  Presterl, E., Renk, H.,  Rodríguez-Baño, J., Săndulescu, O., Scali, F., Skov, R., Velavan, T. P., Vuong, C., Tacconelli, E., Adegnika, A. A., Avery, L., Bonten, M., Cassini, A., Chauvin, C.,  Compri, M., Damborg, P., De Greeff, S., Del Toro, M. D., Filter, M., Franklin, A., Gonzalez-Zorn, B., Grave, K., Hocquet, D., Hoelzle, L. E., Kalanxhi, E., Laxminarayan, R.,  Leibovici, L., Malhotra-Kumar, S.,  Mendelson, M., Paul, M., Muñoz Madero, C., Murri, R., Piddock, L. J. V.,  Ruesen, C., Sanguinetti, M., Schilling, T., Schrijver, R., Schwaber, M. J.,  Scudeller, L.,  Torumkuney, D., Van Boeckel, T., Vanderhaeghen, W., Voss, A.,  Wozniak, T. (2022). The Lancet Regional Health – Europe. 2022, 100563.

DOI: https://doi.org/10.1016/j.lanepe.2022.100563.

Associated with WP5: Science to Policy Translation

Sources and trends of human salmonellosis in Europe, 2015–2019: An analysis of outbreak data.

Chanamé Pinedo, L., Mughini Gras, L., Franz, E., Hald, T., Pires, S. (2022). International Journal of Food Microbiology. 379, 109850.

DOI: https://doi.org/10.1016/j.ijfoodmicro.2022.109850

Project: ADONIS

Prioritisation tool for targeting the monitoring of veterinary pharmaceuticals in soils at national level: the case of Spain.

Rodríguez, A., Iglesias, I., de la Torre, A. (2022). European Journal Soil Sciences. 73(4), e13268.

DOI: https://doi.org/10.1111/ejss.13268

Project: MATRIX 

A One Health real-time surveillance system for nowcasting Campylobacter gastrointestinal illness outbreaks, Norway, week 30 2010 to week 11 2022.

Swanson, D., Koren, C., Hopp, P., Jonsson, M.E., Rø,G. I., White, R. A., Grøneng, G. M. (2022). Euro Surveillance. 27(43), 2101121.

DOI: https://www.eurosurveillance.org/content/10.2807/1560-7917.ES.2022.27.43.2101121

Project: MATRIX  & NOVA

The spatial distribution of cystic echinococcosis in Italian ruminant farms from routine surveillance data.

Entezami, M., Nocerino, M., Widdicombe, J., Bosco, A., Cringoli, G., Casulli. A., Lo Iacono, G., Rindaldi, L., & Prada, J. M. (2022). Frontiers in Tropical Diseases. 3, 1034572.

DOI: https://doi.org/10.3389/fitd.2022.1034572

Project: MACE

Records of Human Deaths from Echinococcosis in Brazil, 1995–2016.

Lise, M. L. Z., Widdicombe, J., Lise, C. R. Z., de Oliveira S. V., de Caldas E. P., Entezami, M., Prada, J. M., Ghiotti, N., Rodrigues e Silva, R., Vizcaychipi, K. A., Del Rio Vilas, V. (2022). Veterinary Sciences. 9(8), 436.

DOI: https://doi.org/10.3390/vetsci9080436

Project: MACE

The economic evaluation of Cystic echinococcosis control strategies focused on zoonotic hosts: A scoping review.

Widdicombe, J., Basáñez, M. G., Entezami, M., Jackson, D., Larrieu, E. & Prada, J. M. (2022). PLOS Neglected Tropical Diseases. 16(7), e0010568.

DOI: https://doi.org/10.1371/journal.pntd.0010568

Project: MACE

Portable Differential Detection of CTX-M ESBL Gene Variants, blaCTX-M-1 and blaCTX-M-15, from Escherichia coli Isolates and Animal Fecal Samples Using Loop-Primer Endonuclease Cleavage Loop-Mediated Isothermal Amplification.

Higgins, O., Chueiri, A., O’Connor, L., Lahiff, S., Burke, L. P., Morris, D.,  Pfeifer, N. M., González Santamarina, B., Berens, C., Menge, C., Caniça, M., Manageiro, V., Kisand, V., Hassan, M. M., Gardner, B., van Vliet, A. H. M., La Ragione, R. M., Gonzalez-Zorn, B. & Smith, T. J. (2022). Microbiology Spectrum. e03316-22.

DOI: https://doi.org/10.1128/spectrum.03316-22

Project: WORLDCOM

Harmonisation of in-silico next-generation sequencing based methods for diagnostics and surveillance. 

Nunez-Garcia, J., AbuOun, M., Storey, N., Brouwer, M. S., Delgado‑Blas, J. F., Mo, S. S., Ellaby, N., Veldman, K. T., Haenni, M., Châtre, P., Madec, J. Y., Hammerl, J. A., Serna, C., Getino, M., La Ragione, R., Naas, T., Telke, A. A., Glaser, P., Sunde, M., Gonzalez-Zorn, B., Ellington, M. J. & Anjum, M. F. (2022). Scientific Reports. 12, 14372.

DOI: https://doi.org/10.1038/s41598-022-16760-9

Project: ARDIG

Screen the unforeseen: Microbiome profiling for detection of zoonotic pathogens in wild rats.

de Cock, M., Fonville, M., de Vries, A., Bossers, A., van den Bogert, B., Hakze-van der Honing, R., Koets, A., Sprong, H., van der Poel, W., & Maas, M. (2022). Transboundary and Emerging Diseases. 00, 1– 15.

DOI: https://doi.org/10.1111/tbed.14759

Project: DESIRE

A governance and coordination perspective – Sweden’s and Italy’s approaches to implementing One Health. 

Humboldt-Dachroeden, Sarah. (2022). SSM- Qualitative Research in Health. 2, 100198.

DOI: https://doi.org/10.1016/j.ssmqr.2022.100198

Associated with WP7: Sustainability & Project SUSTAIN

Comparison and evaluation of analytic and diagnostic performances of four commercial kits for the detection of antibodies against Echinococcus granulosus and multilocularis in human sera.

Peruzzu, A., Mastrandrea, S., Fancellu, A., Bonelli, P., Muehlethaler, K., Masala, G., Santucciu, C. (2022). Comparative Immunology, Microbiology and Infectious Diseases. 86, 101816.

DOI: https://doi.org/10.1016/j.cimid.2022.101816

Project: MEmE

One Health collaboration with and among EU Agencies – Bridging research and policy.

Bronzwaer, S., Catchpole, M., de Coen, W., Dingwall, Z., Fabbri, K., Foltz, C., Ganzleben, C., van Gorcom, R., Humphreys, A., Jokelainen, P., Liebana, E., Rizzi, V., Url, B. (2022). One Health. 15, 100464.

DOI: https://doi.org/10.1016/j.onehlt.2022.100464

Associated with WP5: Science to Policy Translation

Unveiling the incidences and trends of the neglected zoonosis cystic echinococcosis in Europe: a systematic review from the MEmE project.

Casulli A, Abela-Ridder B, Petrone D, Fabiani M, Bobić B, Carmena D, Šoba B, Zerem E, Gargaté MJ, Kuzmanovska G, Calomfirescu C, Rainova I, Sotiraki S, Lungu V, Dezsényi B, Herrador Z, Karamon J, Maksimov P, Oksanen A, Millon L, Sviben M, Shkjezi R, Gjoni V, Akshija I, Saarma U, Torgerson P, Šnábel V, Antolová D, Muhovic D, Besim H, Chereau F, Belhassen García M, Chappuis F, Gloor S, Stoeckle M, Müllhaupt B, Manno V, Santoro A, Santolamazza F. (2022). The Lancet Infectious Diseases. 22 Nov 2022, S1473-3099(22)00638-7.

DOI: https://doi.org/10.1016/S1473-3099(22)00638-7 

Project: MEmE

Cystic echinococcosis in northern Tanzania: a pilot study in Maasai livestock-keeping communities.

Tamarozzi, F., Kibona, T., de Glanville, W.A., Mappi. T., Adonikamu, E., Salewi, A., Misso, K., Maro, V., Casulli, A., Santoro, A., Santolamazza, F., Mmbaga, B. T. & Cleaveland, S. (2022). Parasites & Vectors. 15(1), 396.

DOI: https://doi.org/10.1186/s13071-022-05518-x

Project: MEmE

A Broad-Host-Range Plasmid Outbreak: Dynamics of IncL/M Plasmids Transferring Carbapenemase Genes. 

Getino, M., López-Díaz, M., Ellaby, N., Clark, J., Ellington, M. J., La Ragione, R. M. (2022). Antibiotics. 11(11), 1641.

DOI: https://doi.org/10.3390/antibiotics11111641

Project: ARDIG

Pathogenic Escherichia coliSalmonella spp. and Campylobacter spp. in Two Natural Conservation Centers of Wildlife in Portugal: Genotypic and Phenotypic Characterization.

Pista, A., Silveira, L., Ribeiro, S., Fontes, M., Castro, R., Coelho, A., Furtado, R., Lopes, T., Maia, C., Mixão, V., Borges, V., Sá, A., Soeiro, V., Correia, C.B., Gomes, J. P., Saraiva, M., Oleastro, M., Batista, R. (2022). Microorganisms. 10(11), 2132.

DOI: https://doi.org/10.3390/microorganisms10112132

Project: DiSCoVeR, ADONIS, FedAMR, BeONE

Comparative Genomic Analysis of Antimicrobial-Resistant Escherichia coli from South American Camelids in Central Germany. 

González-Santamarina, B., Weber, M., Menge, C., Berens, C. (2022). Microorganisms. 10(9), 1697.

DOI: https://doi.org/10.3390/microorganisms10091697

Project: WORLDCOM

Comparison of approaches for source attribution of ESBL-producing Escherichia coli in Germany.

Perestrelo, S., Correia Carreira, G., Valentin, L., Fischer, J., Pfeifer, Y., Werner, G., Schmiedel, J., Falgenhauer, L., Imirzalioglu, C., Chakraborty, T. & Käsbohrer, A. (2022). PLOS ONE. 17(7), e0271317.

DOI: https://doi.org/10.1371/journal.pone.0271317

Project: DiSCoVeR

Global Distribution and Diversity of Prevalent Sewage Water Plasmidomes.

Teudt, F., Otani, S., Aarestrup, F.M. (2022). mSystems. 7(5), e0019122.

DOI: https://doi.org/10.1128/msystems.00191-22

Project: FULL-FORCE

Changing epidemiology of Salmonella Enteritidis human infections in the Netherlands and Belgium, 2006 to 2019: a registry-based population study.

Chanamé Pinedo, L., Franz, E., van den Beld, M., Van Goethem, N., Mattheus, W., Veldman, K., Bosch, T., Mughini-Gras, L., & Pijnacker, R. (2022). Euro Surveillance. 27(38), 2101174.

DOI: https://doi.org/10.2807/1560-7917.ES.2022.27.38.2101174

Project: ADONIS

Detection of an IMI-2 carbapenemase-producing Enterobacter asburiae at a Swedish feed mill.

Börjesson, S., Brouwer, M. S. M., Östlund, E., Eriksson, J., Elving, J., Lindsjö, O. K. and Engblom, L. I. (2022). Frontiers in Microbiology. 13, 993454.

DOI: https://doi.org/10.3389/fmicb.2022.993454

Project: FULL-FORCE

What is a biosecurity measure? A definition proposal for animal production and linked processing operations.

Huber, N., Andraud, M., Sassu, E. L., Prigge, C., Zoche-Golob, V., Käsbohrer, A., DÁngelantonio, D., Vitrop, A., Zmudski, J., Jones, H., Smith, R. P., Tobias, T. & Burrow, E. (2022). One Health. 15, 100433.

DOI: https://doi.org/10.1016/j.onehlt.2022.100433

Project: BIOPIGEE

Genomic Analysis of a mcr-9.1-Harbouring IncHI2-ST1 Plasmid from Enterobacter ludwigii Isolated in Fish Farming. 

Manageiro, V., Salgueiro, V., Rosado, T., Bandarra, N. M., Ferreira, E., Smith, T., Dias, E., Caniça, M. (2022). Antibiotics. 11(9), 1232.

DOI: https://doi.org/10.3390/antibiotics11091232

Project: WORLDCOM

Genomic characterization of multidrug-resistant Salmonella serovar Kentucky ST198 isolated in poultry flocks in Spain (2011-2017).

Samper-Cativiela, C., Diéguez-Roda, B., Trigo da Roza, F., Ugarte-Ruiz, M., Elnekave, E., Lim, S., Hernández, M., Abad, D., Collado, S., Sáez, J. L., de Frutos, C., Agüero, M., Moreno, M. Á., Escudero, J. A., & Álvarez, J. (2022). Microbial genomics. 8(3), 000773.

DOI: https://doi.org/10.5281/zenodo.7082555

Project: ADONIS

Succession in the caecal microbiota of developing broilers colonised by extended-spectrum β-lactamase-producing Escherichia coli.

Cárdenas-Rey, I., Bello Gonzalez, T.d.J., van der Goot, J., Ceccarelli, D., Bouwhuis, G., Schillemans, D., Jurburg, S., Veldman, K., De Visser, A., and Brouwer, M. (2022) Animal Microbiome 4, 51.

DOI: https://doi.org/10.1186/s425

Project: VIMOGUT

An outbreak of cryptosporidiosis associated with drinking water in north-eastern Italy, August 2019: microbiological and environmental investigations

Franceschelli, A., Bonadonna, L., Cacciò, S. M., Sannella, A., R., Cintori C., Gargiulo R., Coccia A. M., Paradiso R., Iaconelli M., Briancesco R. and Tripodi A. (2022) Euro Surveillance. 27(35).

DOI : https://doi.org/10.2807/1560-7917.ES.2022.27.35.2200038

Project: PARADISE

Use of genomics to explore AMR persistence in an outdoor pig farm with low antimicrobial usage.

Storey, N., Cawthraw, S., Turner, O., Rambaldi, M., Lemma, F., Horton, R., Randall, L., Duggett, N. A., AbuOun, M., Martelli, F., & Anjum, M. F. (2022). Microbial genomics. 8(3), 000782.

DOI: https://doi.org/10.1099/mgen.0.000782

Project: ARDIG

Search term “One Health” remains of limited use to identify relevant scientific publications: Denmark as a case study.

Benedetti, G., Jokelainen, P., & Ethelberg, S. (2022). Frontiers in Public Health. 10, 938460.

DOI: https://doi.org/10.3389/fpubh.2022.938460

WP5

A European-wide dataset to uncover adaptive traits of Listeria monocytogenes to diverse ecological niches.

Félix, B., Sevellec, Y., Palma, F. et al. (2022). Science Data. 9, 190.

DOI: https://doi.org/10.1038/s41597-022-01278-6

Project: LISTADAPT

FepR as a central genetic target in quaternary
ammonium compounds (QAC)-adaptive process and cross-resistance to ciprofloxacin in Listeria monocytogenes.

Douarre, P. E., Sévellec, Y., Le Grandois, P., Soumet, C., Bridier, A., Roussel, S. (2022). Frontiers in Microbiology. 13, 864576.

DOI: https://doi.org/10.3389/fmicb.2022.864576

Project: LISTADAPT

Listeria monocytogenes: Investigation of fitness in soil does not support the relevance of ecotypes.

Sévellec, Y., Ascencio, E., Douarre, P. E., Félix, B., Gal, L., Garmyn, D., Guillier, L., Piveteau, P., Roussel, S. (2022). Frontiers in Microbiology. 13, 917588.

DOI: https://doi.org/10.3389/fmicb.2022.917588

Project: LISTADAPT

Genomics elements located in the accessory repertoire drive the adaptation to biocides in Listeria monocytogenes strains from different ecological niches.

Palma, F., Radomski, N., Guérin, A., Sévellec, Y., Félix, B., Bridier, A., Soumet, C., Roussel, S., Guillier, L. (2022). Food Microbiology. 106, 103757.

DOI: https://doi.org/10.1016/j.fm.2021.103757

Project: LISTADAPT

Assessment of the Transmission Dynamics of Clostridioides difficile in a Farm Environment Reveals the Presence of a New Toxigenic Strain Connected to Swine Production.

Alves, F., Nunes, A., Castro, R., Sequeira, A., Moreira, O., Matias, R., Rodrigues, J. C., Silveira, L., Gomes, J. P., & Oleastro, M. (2022). Frontiers in Microbiology. 13, 858310.

DOI: https://doi.org/10.3389/fmicb.2022.858310

Project: FED-AMR

A Dual Barcoding Approach to Bacterial Strain Nomenclature: Genomic Taxonomy of Klebsiella pneumoniae Strains.

Hennart, M., GuED-AMRglielmini, J., Bridel, S., Maiden, M. C. J., Jolley, K. A., Criscuolo, A., Brisse, S. (2022). Molecular Biology and Evolution. 39 (7), msac135.

DOI: https://doi.org/10.1093/molbev/msac135

Project: Codes4strains

The Retrospective on Atypical Brucella Species Leads to Novel Definitions.

Occhialini, A., Hofreuter, D., Ufermann, C. M., Al Dahouk, S., & Köhler, S. (2022). Microorganisms. 10(4), 813.

DOI: https://doi.org/10.3390/microorganisms10040813

Project: IDEMBRU

IS6110 Copy Number in Multi-Host Mycobacterium bovis Strains Circulating in Bovine Tuberculosis Endemic French Regions.

Charles, C., Conde, C., Biet, F., Boschiroli, M-L. & Michelet, L. (2022). Frontiers in Microbiology. 9, 891902.

DOI: https://doi.org/10.3389/fmicb.2022.891902

Project: PEMbo

Remarkable genomic diversity among Escherichia isolates recovered from healthy chickens. 

Thomson, N. M., Gilroy, R., Getino, M., Foster-Nyarko, E., van Vliet, A. H. M., La Ragione, R. M. & Pallen, M. J. (2022). Peer J. 10, e12935.

DOI: https://doi.org/10.7717/peerj.12935

Projects: WORLDCOM & ARDIG

Antibiotic Resistance in Campylobacter spp. Isolated from Broiler Chicken Meat and Human Patients in Estonia.

Tedersoo, T., Roasto, M., Mäesaar, M., Häkkinen, L., Kisand, K., Ivanova, M., Valli, M. H., & Meremäe, K. (2022). Microorganisms. 10(5), 1067.

DOI: https://doi.org/10.3390/microorganisms10051067

Project: WORLDCOM

Survey on shedding of selected pathogenic, zoonotic or antimicrobial resistant bacteria by South American camelids in Central Germany.

González-Santamarina, B., Schnee, C., Koehler, H., Weber, M., Methner, U., Seyboldt, C., Berens, C. & Menge, C. (2022). Berliner Und Münchener Tierärztliche Wochenschrift. 135, 1–16.

DOI: https://doi.org/10.2376/1439-0299-2021-21

Project: WORLDCOM

The prevalence, counts, and MLST genotypes of Campylobacter in poultry meat and genomic comparison with clinical isolates.

Tedersoo, T., Roasto, M., Mäesaar, M., Kisand, V., Ivanova, M., Meremäe, M. (2022). Poultry Science. 101(4), 101703.

DOI: https://doi.org/10.1016/j.psj.2022.101703

Project: WORLDCOM

Clonal and plasmid-mediated flow of ESBL/AmpC genes in Escherichia coli in a commercial laying hen farm.

Aldea, I., Gibello, A., Hernández, M., & Moreno, M.A. (2022). Veterinary Microbiology. 270, 109453.

DOI: https://doi.org/10.1016/j.vetmic.2022.109453

Project: ECO-HEN

JMM profile: Loop-mediated isothermal amplification (LAMP): for the rapid detection of nucleic acid targets in resource-limited settings. 

Hassan, M. M., Grist, L. F., Poirier, A. C., & La Ragione, R. M. (2022). Journal of medical microbiology. 71(5), 001522.

DOI: https://doi.org/10.1099/jmm.0.001522

Project: WORLDCOM

Dissemination Routes of Carbapenem and Pan-Aminoglycoside Resistance Mechanisms in Hospital and Urban Wastewater Canalizations of Ghana.

Delgado-Blas, J. F., Valenzuela Agüi, C., Marin Rodriguez, E., Serna, C., Montero, N., Saba, C., & Gonzalez-Zorn, B. (2022). mSystems. 7(1), e0101921.

DOI: https://doi.org/10.1128/msystems.01019-21

Project: WORLDCOM

Genomic Screening of Antimicrobial Resistance Markers in UK and US Campylobacter Isolates Highlights Stability of Resistance over an 18-Year Period. 

van Vliet, A., Thakur, S., Prada, J. M., Mehat, J. W., & La Ragione, R. M. (2022). Antimicrobial agents and chemotherapy. 66(5), e0168721.

DOI: https://doi.org/10.1128/aac.01687-21

Project: WORLDCOM

Species and genotypes belonging to Echinococcus granulosus sensu lato complex causing human cystic echinococcosis in Europe (2000–2021): a systematic review. 

Casulli, A., Massolo, A., Saarma, U., Umhang, G., Santolamazza, F., Santoro, A. (2022). Parasites Vectors. 15109.

DOI: https://doi.org/10.1186/s13071-022-05197-8

Project: MEmE

Chromosome-scale Echinococcus granulosus (genotype G1) genome reveals the Eg95 gene family and conservation of the EG95-vaccine molecule. 

Korhonen, P.K., Kinkar, L., Young, N.D. et al. (2022). Communications Biology. 5199.

DOI: https://doi.org/10.1038/s42003-022-03125-1

Project: MEmE

Insights into Human Cystic Echinococcosis in the Kurdistan Region, Iraq: Characteristics and Molecular Identification of Cysts.

Issa, A.R., Arif, S. H., Mohammed, A. A., Santolamazza, F., Santoro, A., Mero, W.M.S., Casulli, A. (2022). Pathogens. 11(4), 408.

DOI: https://doi.org/10.3390/pathogens11040408

Project: MEmE

SARS-CoV-2 in a Mink Farm in Italy: Case Description, Molecular and Serological Diagnosis by Comparing Different Tests.

Moreno, A., Lelli, D., Trogu, T., Lavazza, A., Barbieri, I., Boniotti, M., Pezzoni, G., Salogni, C., Giovannini, S., Alborali, G., Bellini, S., Boldini, M., Farioli, M., Ruocco, L., Bessi, O., Maroni Ponti, A., Di Bartolo, I., De Sabato, L., Vaccari, G., Belli, G., Margutti, A., Giorgi, M. (2022). Viruses. 14(8), 1738.

DOI: https://doi.org/10.3390/v14081738

Project: COVRIN

Neutralising antibody activity against SARS-CoV-2 variants, including Omicron, in an elderly cohort vaccinated with BNT162b2.

Newman, J., Thakur, N., Peacock, T.P., Bialy, D., Elreafey, A.M., Bogaardt, C., Horton, D.L., Ho, S., Kankeyan, T., Carr, C., Hoschler, K., Barclay, W.S., Amirthalingam, G., Brown, K., Charleston, B., Bailey, D. (2022). Nature Microbiology. 7, 1180–1188.

DOI: https://doi.org/10.1038/s41564-022-01163-3

Project: COVRIN

SARS-CoV-2 in pets of infected family groups in a severely affected region in Spain.

Mendez, A., Jiménez-Clavero, M.A., Calvo, C., Pérez-Ramírez, E.,  Fernández-Pinero, J., Llorente, F., Sainz, T., Aguilera-Sepúlveda, P., Alcolea, S., Escolano, L., Cano, C., Novoa, I., De la Torre, A. & Iglesias, I. (2022). International Journal of Infectious Diseases. 116, Supplement, S25.

DOI: https://doi.org/10.1016/j.ijid.2021.12.059

Project: COVRIN

Multicentre evaluation of a selective isolation protocol for detection of mcr-positive E. coli and Salmonella spp. in food-producing animals and meat. 

Perrin-Guyomard, A., Granier, S.A., Slettemeås, J.S., Anjum, M., Randall, L., AbuOun, M., Pauly, N., Irrgang, A., Hammerl, J.A., Kjeldgaard, J.S., Hammerum, A., Franco, A., Skarżyńska, M., Kamińska, E., Wasyl, D., Dierikx, C., Börjesson, S., Geurts, Y., Haenni, M. and Veldman, K. (2022). Letters in Applied Microbiology. Early view.

DOI: https://doi.org/10.1111/lam.13717

Project: IMPART

Characterization of Atypical Shiga Toxin Gene Sequences and Description of Stx2j, a New Subtype.

Gill, A., Dussault, F., McMahon, T., Petronella, N., Wang, X., Cebelinski, E., Scheutz, F., Weedmark, K., Blais, B., & Carrillo, C. (2022). Journal of Clinical Microbiology. 60(3), e0222921.

DOI: https://doi.org/10.1128/jcm.02229-21

Project: OH-HARMONY-CAP

Complex network analysis to understand trading partnership in French swine production.

Hammami, P., Widgren, S., Grosbois, V., Apolloni, A., Rose, N., Matthieu, A. (2022).  PLOS ONE. 17(4), e0266457.

DOI: https://doi.org/10.1371/journal.pone.0266457

Project: BIOPIGEE

Assessing Campylobacter cross-contamination of Danish broiler flocks at slaughterhouses considering true flock prevalence estimates and ad-hoc sampling.

Foddai, A., Takeuchi-Storm, N., Høg, B. B., Kjeldgaard, J. S., Andersen, J. K., Ellis-Iversen, J. (2022). Microbial Risk Analysis. 21, 100214.

DOI: https://doi.org/10.1016/j.mran.2022.100214

Project: ORION

A Longitudinal Survey of Antibiotic-Resistant Enterobacterales in the Irish Environment, 2019-2020. 

Hooban, B., Fitzhenry, K., O’Connor, L., Miliotis, G., Joyce, A., Chueiri, A., Farrell, M. L., DeLappe, N., Tuohy, A., Cormican, M., & Morris, D. (2022). The Science of the total environment. 828, 154488. Advance online publication.

DOI: https://doi.org/10.1016/j.scitotenv.2022.154488

Project: MedVetKlebs

Genomic evolution of the globally disseminated multidrug-resistant Klebsiella pneumoniae clonal group 147.

Rodrigues, C., Desai, S., Passet, V., Gajjar, D., & Brisse, S. (2022). Microbial genomics. 8(1), 000737.

DOI: https://doi.org/10.1099/mgen.0.000737

Project: MedVetKlebs

A statistical modelling approach for source attribution meta-analysis of sporadic infection with foodborne pathogens

Mughini-Gras, L.Benincà, E.McDonald, S. A.de Jong, A.Chardon, J.Evers, E., & Bonačić Marinović, A. A. (2022). Zoonoses and Public Health. 001– 12.

DOI: https://doi.org/10.1111/zph.12937

Project: DiSCoVeR

Comparative performance of five recombinant and chimeric antigens in a time-resolved fluorescence immunoassay for detection of Toxoplasma gondii infection in cats.

Huertas-López, A., Contreras Rojo, M., Sukhumavasi, W., Martínez-Subiela, S., Álvarez-García, G., López-Ureña, N. M., Cerón, J. J., & Martínez-Carrasco, C. (2022). Veterinary Parasitology. 304, 109703.

DOI: https://doi.org/10.1016/j.vetpar.2022.109703

Project: TOXOSOURCES

Unifying Virulence Evaluation in Toxoplasma gondii: A Timely Task.

Calero-Bernal, R., Fernández-Escobar, M., Katzer, F., Su, C., & Ortega-Mora, L. M. (2022). Frontiers in cellular and infection microbiology. 12, 868727.

DOI: https://doi.org/10.3389/fcimb.2022.868727

Project: TOXOSOURCES

Toxoplasma gondii Genotyping: A Closer Look Into Europe. 

Fernández-Escobar, M., Schares, G., Maksimov, P., Joeres, M., Ortega-Mora, L. M., & Calero-Bernal, R. (2022). Frontiers in cellular and infection microbiology. 12, 842595.

DOI: https://doi.org/10.3389/fcimb.2022.842595

Project: TOXOSOURCES

Detection of anti-Neospora caninum antibodies in sheep’s full-cream milk by a time-resolved fluorescence immunoassay.

Huertas-López, A., Sánchez-Sánchez, R., Diezma-Díaz, C., Álvarez-García, G., Martínez-Carrasco, C., Martínez-Subiela, S. &  Cerón, J. J. (2022). Veterinary Parasitology. 301, 109641.

DOI: https://doi.org/10.1016/j.vetpar.2021.109641

Project: TOXOSOURCES

Toxoplasma gondii Genetic Diversity in Mediterranean Dolphins.

Fernández-Escobar, M., Giorda, F., Mattioda, V., Audino, T., Di Nocera, F., Lucifora, G., Varello, K., Grattarola, C., Ortega-Mora, L.M., Casalone, C., Calero-Bernal, R. (2022). Pathogens. 2022. 11(8), 909.

DOI: https://doi.org/10.3390/pathogens11080909

Project: TOXOSOURCES

Contamination of Soil, Water, Fresh Produce, and Bivalve Phylogenomic characterization and signs of microevolution in the 2022 multi-country outbreak of monkeypox virus. 

Isidro, J., Borges, V., Pinto, M., Sobral, D., Santos, J. D., Nunes, A., Mixão, V., Ferreira, R., Santos, D., Duarte, S., Vieira, L., Borrego, M. J., Núncio, S., de Carvalho, I. L., Pelerito, A., Cordeiro, R., & Gomes, J. P. (2022). Nature medicine. 28(8), 1569–1572.

DOI: https://doi.org/10.1038/s41591-022-01907-y

Project: TOXOSOURCES

Mollusks with Toxoplasma gondii Oocysts: A Systematic Review.

López Ureña, N. M., Chaudhry, U., Calero Bernal, R., Cano Alsua, S., Messina, D., Evangelista, F., Betson, M., Lalle, M., Jokelainen, P., Ortega Mora, L.M., Álvarez García, G. (2022). Microorganisms. 10(3), 517.

DOI: https://doi.org/10.3390/microorganisms10030517

Project: TOXOSOURCES

Veterinarians as a Risk Group for Zoonoses: Exposure, Knowledge and Protective Practices in Finland. 

Kinnunen, P. M., Matomäki, A., Verkola, M., Heikinheimo, A., Vapalahti, O., Kallio-Kokko, H., Virtala, A. M., & Jokelainen, P. (2022). Safety and health at work. 13(1), 78–85.

DOI: https://doi.org/10.1016/j.shaw.2021.10.008

Project: TOXOSOURCES

Participation in One Health Networks and Involvement in the COVID-19 Pandemic Response: A Global Study.

Streichert, L. C., Sepe, L. P., Jokelainen, P., Stroud, C. M., Berezowski, J., & Del Rio Vilas, V. J. (2022). Frontiers in Public Health. 126.

DOI: https://doi.org/10.3389/fpubh.2022.830893

High Prevalence of Klebsiella pneumoniae in European Food Products: a Multicentric Study Comparing Culture and Molecular Detection Methods.

Rodrigues, C., Hauser, K., Cahill, N., Ligowska-Marzęta, M., Centorotola, G., Cornacchia, A., Garcia Fierro, R., Haenni, M., Nielsen, E. M., Piveteau, P., Barbier, E., Morris, D., Pomilio, F., & Brisse, S. (2022). Microbiology spectrum. 10(1), e0237621.

DOI: https://doi.org/10.1128/spectrum.02376-21

Project: MedVetKlebs

Retrospective Cohort Study on Human Cystic Echinococcosis in Khyber Pakhtunkhwa Province (Pakistan) Based on 16 Years of Hospital Discharge Records.

Khan, H., Casulli, A., Harandi, M.F., Afzal, M.S., Saqib, M.A.N., Ahmed, H. A (2022). Pathogens. 11, 194.

DOI: https://doi.org/10.3390/pathogens11020194

Project: MEmE

A European multicenter evaluation study to investigate the performance on commercially available selective agar plates for the detection of carbapenemase producing Enterobacteriaceae.

Dierikx C., Börjesson S., Perrin-Guyomard A., Haenni M., Norström M., Divon H. H., Ilag H. K., Granier S. A., Hammerum A., Sejer Kjeldgaard J., Pauly N., Randall L., Anjum M. F., Smialowska A., Franco A., Veldman K., Schau Slettemeås J. (2022) Journal of Microbiological Methods. 193, 106418

DOI: https://doi.org/10.1016/j.mimet.2022.106418

Project: IMPART

2021

List of OHEJP Publications 2021

DOI: https://doi.org/10.5281/zenodo.6511418

Colistin resistance genes mcr-1 to mcr-5, including a case of triple occurrence (mcr-1, -3 and -5), in Escherichia coli isolates from faeces of healthy pigs, cattle and poultry in Belgium, 2012-2016.

Timmermans, M., Wattiau, P., Denis, O., & Boland, C. (2021). International journal of antimicrobial agents. 57(6), 106350.

DOI: https://doi.org/10.1016/j.ijantimicag.2021.106350

Project: LIN-RES

First Isolation of Brucella canis from a breeding kennel in Italy.

De Massis, F., Sacchini, F., Averaimo, D., Garofolo, G., Lecchini, P., Ruocco, L., Lomolino, R., Santucci, U., Sgariglia, E., Crotti, S., Petrini, A., Migliorati, G., D’Alterio, N., Gavaudan, S., & Tittarelli, M. (2021). Veterinaria Italiana. 57(3).

DOI: https://doi.org/10.12834/VetIt.2497.15848.1

Project: IDEMBRU

DiagnoTop: A Computational Pipeline for Discriminating Bacterial Pathogens without Database Search.

Borges Lima, D., Dupré, M., Mariano Santos, M. D., Carvalho, P. C., & Chamot-Rooke, J. (2021). Journal of the American Society for Mass Spectrometry. 32(6), 1295–1299.

DOI: https://doi.org/10.1021/jasms.1c00014

Project: TOX-Detect

The Use of Flocked Swabs with a Protective Medium Increases the Recovery of Live Brucella spp. and DNA Detection. 

Freddi, L., Djokic, V., Petot-Bottin, F., Girault, G., Perrot, L., Ferreira Vicente, A., & Ponsart, C. (2021). Microbiology spectrum. 9(3), e0072821.

DOI: https://doi.org/10.1128/Spectrum.00728-21

Project: IDEMBRU

Identification of a blaVIM-1-Carrying IncA/C2 Multiresistance Plasmid in an Escherichia coli Isolate Recovered from the German Food Chain.

Pauly, N., Hammerl, J. A., Grobbel, M., Käsbohrer, A., Tenhagen, B-A., Malorny, B., Schwarz, S., Meemken, D., Irrgang, A. (2021). Microorganisms.  9(1), 29.

DOI: https://doi.org/10.3390/microorganisms9010029

Project: IMPART

Comparative Analysis of Genetic Determinants Encoding Cadmium, Arsenic, and Benzalkonium Chloride Resistance in Listeria monocytogenes of Human, Food, and Environmental Origin

Gelbicova, T., Florianova, M., Hluchanova, L., Kalova, A., Korena, K., Strakova, N., Karpiskova, R. (2021). Frontiers in Microbiology. 11, 599882.

DOI: https://doi.org/10.3389/fmicb.2020.599882

Project: LISTADAPT

The SARS-CoV-2 Reproduction Number R0 in Cats.

Gonzales, J. L., de Jong, M. C. M., Gerhards, N. M., & Van der Poel, W. H. M. (2021). Viruses, 13 (12), 2480.

DOI: https://doi.org/10.3390/v13122480

Projects: COVRIN & MATRIX

An FSKX compliant source attribution model for salmonellosis and a look at its major hidden pitfalls.

Sundermann, E. M., Correia Carreira, G., Käsbohrer, A. (2021). Food Modelling Journal. 2, e70008.

DOI: https://doi.org/10.3897/fmj.2.70008

Project: MATRIX

Genomic Epidemiology and Strain Taxonomy of Corynebacterium diphtheriae

Guglielmini, J., Hennart, M., Badell, E., Toubiana, J., Criscuolo, A., & Brisse, S. (2021). Journal of clinical microbiology. 59(12), e0158121.

DOI: https://doi.org/10.1128/JCM.01581-21

Project: Codes4strains

Impact of the COVID-19 pandemic on human salmonellosis in the Netherlands.

Mughini-Gras, L., Chanamé Pinedo, L., Pijnacker, R., Van den Beld, M., Wit, B., Veldman, K., Bosch, T., Franz, E. (2021). Epidemiology and Infection, 149, E254.

DOI: https://doi.org/10.1017/S0950268821002557

Project: ADONIS

Impact of animal saliva on the performance of rapid antigen tests for detection of SARS-CoV-2 (wildtype and variants B.1.1.7 and B.1.351). 

Hagag, I. T., Weber, S., Sadeghi, B., Groschup, M. H., & Keller, M. (2021). Veterinary microbiology, 262, 109243.

DOI: https://doi.org/10.1016/j.vetmic.2021.109243

Project: COVRIN

Characterization of Clinical Escherichia coli Strains Producing a Novel Shiga Toxin 2 Subtype in Sweden and Denmark.

Bai, X., Scheutz, F., Dahlgren, H. M., Hedenström, I., & Jernberg, C. (2021). Microorganisms. 9(11), 2374.

DOI: https://doi.org/10.3390/microorganisms9112374

Project: OH-HARMONY-CAP

Coverage of the national surveillance system for human Salmonella infections, Belgium, 2016-2020.

Van Goethem N., Van Den Bossche A., Ceyssens P. J., Lajot A., Coucke W., Vernelen K., Roosens N. H. C., De Keersmaecker S. C. J., Van Cauteren D., Mattheus W. (2021) PLoS ONE 16(8): e0256820.

DOI: https://doi.org/10.1371/journal.pone.0256820

Project: ADONIS

Myocardial Injury Complicated by Systolic Dysfunction in a COVID-19-Positive Dog.

Romito G., Bertaglia T., Bertaglia L., Decaro N., Uva A., Rugna G., Moreno A., Vincifori G., Dondi F., Diana A., Cipone M. (2021) Animals. 11(12):3506.

DOI: https://doi.org/10.3390/ani11123506

Project: COVRIN

Long-term persistence of neutralizing SARS-CoV-2 antibodies in pets. 

Decaro, N., Grassi, A., Lorusso, E., Patterson, E. I., Lorusso, A., Desario, C., Anderson, E. R., Vasinioti, V., Wastika, C. E., Hughes, G. L., Valleriani, F., Colitti, B., Ricci, D., Buonavoglia, D., Rosati, S., Cavaliere, N., Paltrinieri, S., Lauzi, S., Elia, G., & Buonavoglia, C. (2021). Transboundary and emerging diseases. 1-4.

DOI: https://doi.org/10.1111/tbed.14308

Project: COVRIN

Identification of Oocyst-Driven Toxoplasma gondii Infections in Humans and Animals through Stage-Specific Serology—Current Status and Future Perspectives. 

Álvarez García G., Davidson R., Jokelainen P., Klevar S., Spano F., Seeber F. (2021) Microorganisms. 9(11):2346.

DOI: https://doi.org/10.3390/microorganisms9112346

Project: TOXOSOURCES

Differential susceptibility of SARS-CoV-2 in animals: Evidence of ACE2 host receptor distribution in companion animals, livestock and wildlife by immunohistochemical characterisation.

Lean F.Z.X.Núñez A.Spiro S.Priestnall S.L.Vreman S.Bailey D.James J.Wrigglesworth E.Suarez-Bonnet A.Conceicao C.Thakur N.Byrne A.M.P.Ackroyd S.Delahay R. J.van der Poel W. H. M.Brown I.H.Fooks A.R., Brookes S.M. (2021). Transboundary and Emerging Diseases112.

DOI: https://doi.org/10.1111/tbed.14232

Project: COVRIN

Changes in serum biomarkers of inflammation in bovine besnoitiosis.

González-Barrio, D., Huertas-López, A., Diezma-Díaz, C., Ferre I., Cerón J. J., Ortega-Mora L. M. Álvarez-García G. (2021)  Parasites Vectors 14488.

DOI: https://doi.org/10.1186/s13071-021-04991-0

Project: TOXOSOURCES

Identification of molecular biomarkers associated with disease progression in the testis of bulls infected with Besnoitia besnoiti.

González-Barrio D., Diezma-Díaz C., Gutiérrez-Expósito D., Tabanera E., Jiménez-Meléndez A., Pizarro M., González-Huecas M., Ferre I., Ortega-Mora L. M., Álvarez-García G. (2021) Vet Res 52,106.

DOI: https://doi.org/10.1186/s13567-021-00974-2

Project: TOXOSOURCES

Molecular survey of Besnoitia spp. (Apicomplexa) in faeces from European wild mesocarnivores in Spain.

González-Barrio D., Köster P.C., Habela M.A., Martín-Pérez M., Fernández-García J.L., Balseiro A., Barral M., Nájera F., Figueiredo A.M., Palacios M.J., Mateo M., Carmena D., Álvarez-García G., Calero-Bernal R. (2021). Transboundary and Emerging Diseases683156– 3166.

DOI: https://doi.org/10.1111/tbed.14206.

Project: TOXOSOURCES

Seroprevalence of Toxoplasma gondii in outdoor dogs and cats in Bangkok, Thailand.

Huertas-López A., Sukhumavasi W., Álvarez-García G., Martínez-Subiela S., Cano-Terriza D., Almería S., Dubey J.P., García-Bocanegra I., Cerón J.J., Martínez-Carrasco C. (2021). Parasitology, 148(7), 843-849. DOI: 10.1017/S0031182021000421

Project: TOXOSOURCES

Development and validation of a time-resolved fluorescence immunoassay for the detection of anti-Toxoplasma gondii antibodies in goats.

Huertas-López A., Martínez-Subiela S., Cerón J.J., Vázquez-Calvo Á., Pazmiño-Bonilla E.D., López-Ureña N.M., Martínez-Carrasco C., Álvarez-García G. (2021) Veterinary Parasitology 293, 109432. 

DOI: https://doi.org/10.1016/j.vetpar.2021.109432.

Project: TOXOSOURCES

Draft Genome Sequence of a Multidrug-Resistant Escherichia coli Sequence Type 1193 Pandemic Clone Isolated from Wastewater in Austria

Cabal A., Peischl N., Rab G., Stöger A., Springer B., Sucher J., Allerberger F. and Ruppitsch W. (2021) Microbiol Resour Announc 10:e00762-21.

DOI: https://doi.org/10.1128/MRA.00762-21 

Project: FED-AMR

A large panel of chicken cells are invaded in vivo by Salmonella Typhimurium even when depleted of all known invasion factors. 

Roche S. M., Holbert S., Le Vern Y., Rossignol C., Rossignol A., Velge P. and Virlogeux-Payant I. (2021) Open Biology. 11, 210117

DOI: https://doi.org/10.1098/rsob.210117

Project: MoMIR-PPC

Large diversity of linezolid-resistant isolates discovered in food-producing animals through linezolid selective monitoring in Belgium in 2019.

Timmermans M, Bogaerts B, Vanneste K, De Keersmaecker S C J, Roosens N H C, Kowalewicz C, Simon G, Argudín M A, Deplano A, Hallin M, Wattiau P, Fretin D, Denis O and Boland C. (2021) Journal of Antimicrobial Chemotherapy, dkab376.

DOI: https://doi.org/10.1093/jac/dkab376

Project: LIN-RES

SARS-CoV-2 surveillance in Italy through phylogenomic inferences based on Hamming distances derived from pan-SNPs, -MNPs and -InDels.  

Di Pasquale A, Radomski N, Mangone I, Calistri P, Lorusso A and Cammà C. (2021). BMC Genomics. 22, 782.

DOI:  https://doi.org/10.1186/s12864-021-08112-0

Project: COVRIN

Morphological Characteristics of Alveolar and Cystic Echinococcosis Lesions in Human Liver and Bone.  

Barth, TFE, Casulli, A (2021). Pathogens10, 1326.

DOI: https://doi.org/10.3390/pathogens10101326

Project: MEME

Peek into the Plasmidome of Global Sewage.

Kirstahler, P., Teudt, F., Otani, S., Aarestrup, FM, Pamp, SJ., (2021). mSystems. 6:e00283-21.

DOI: https://doi.org/10.1128/mSystems.00283-21

Project: FULL-FORCE

The disease burden of ocular toxoplasmosis in Denmark in 2019: Estimates based on laboratory testing of ocular samples and on publicly available register data.

Marstrand, J., Kurtzhals, JAL., Fuchs, HJ., Nielsen, HV., Jokelainen, P. (2021). Parasite Epidemiology and Control. 15, e00229.

DOI: https://doi.org/10.1016/j.parepi.2021.e00229

Project: TOXOSOURCES

Population genomics and antimicrobial resistance dynamics of Escherichia coli in wastewater and river environments.

Delgado-Blas, JF., Ovejero, CM., David, S., Montero, N., Calero-Caceres, W., Garcillan-Barcia, MP., de la Cruz, F., Muniesa, M., Aanensen, DM., Gonzalez-Zorn, B. (2021). Communications Biology. 4, 457.

DOI: https://doi.org/10.1038/s42003-021-01949-x

Project: WORLDCOM

The cytotoxic potential of Bacillus cereus strains of various origins.

Glasset, B., Sperry, M., Dervyn, R., Herbin, S., Brisabois, A., Ramarao, N. (2021). Food Microbiology. 98, 103759.

DOI: https://doi.org/10.1016/j.fm.2021.103759

Project: TOX-detect

A longitudinal study of Toxoplasma gondii seroconversion on four large Danish sow farms. 

Olsen, A., Denwood, M., Houe, H., Birk Jensen, T., Nielsen, HV. (2021). Veterinary Parasitology.  295, 109460.

DOI: https://doi.org/10.1016/j.vetpar.2021.109460

Project: TOXOSOURCES

Zoonotic pathogens in wild muskoxen (Ovibos moschatus) and domestic sheep (Ovis aries) from Greenland. 

Berg, RPKD., Stensvold, CR., Jokelainen, P., Grønlund, AK., Nielsen, HV., Kutz, S., Kapel CMO. (2021). Veterinary Medicine and Science. 1-14.

DOI: https://doi.org/10.1002/vms3.599

Project: TOXOSOURCES

Comparison of Direct and Indirect Toxoplasma gondii Detection and Genotyping in Game:Relationship and Challenges.

Stollberg, K.C., Schares, G., Mayer-Scholl, A., Hrushetska, I., Diescher, S., Johne, A., Richter, M.H., Bier, N.S. (2021). Microorganisms, 9, 1663.

DOI: https://doi.org/10.3390/microorganisms9081663

Project: TOXOSOURCES

Attention to the Tripartite’s one health measures in national action plans on antimicrobial resistance. 

Munkholm, L., Rubin, O., Bækkeskov, E., & Humboldt-Dachroeden, S. (2021). Journal of public health policy. 42(2), 236–248.

DOI: https://doi.org/10.1057/s41271-021-00277-y

Project: SUSTAIN

Draft genome sequences of two Listeria monocytogenes strains isolated from invasive snails (Arion vulgaris) in Austria in 2019.

Pietzka, A., Murer, A,. Lennkh, A., Hauser, K., Vötsch, K., Springer, B., Allerberger, F., Ruppitsch, W. (2021). Microbiology Resource Announcements. 10:e00375-21.

DOI: https://doi.org/10.1128/MRA.00375-21

Project: LISTADAPT

Refinement of the COHESIVE Information System towards a unified ontology of food terms for the public health organisations.

Mangone, I., Radomski, N., Di Pasquale, A., Santurbano, A., Calistri, P., Cammà, C., Maassen, K. (2021).

DOI: https://doi.org/10.5281/zenodo.5482422

Project: COHESIVE

Mining Public Metagenomes for Environmental Surveillance of Parasites: A Proof of Principle.

Franssen F., Janse I., Janssen D., Caccio SM., Vatta P., van der Giessen J., van Passel MWJ. (2021). Frontiers in Microbiology. 12:622356.

DOI: https://doi.org/10.3389/fmicb.2021.622356

Project: PARADISE

A shotgun metagenomics approach to detect and characterise unauthorised genetically modified microorganisms in microbial fermentation products.

Buytaers, F E., Fraiture, M-A., Berbers, B., Vandermassen, E., Hoffman, S., Papazova, N., Vanneste, K., Marchal, K., Roosens, N H C., De Keersmaecker, S C J. (2021). Food Chemistry: Molecular Sciences. 2, 100023.

DOI: https://doi.org/10.1016/j.fochms.2021.100023

Project: FARMED

A user-friendly decision support tool to assist one-health risk assessors.

Dewar, R., Gavin, C., McCarthy, C., Taylor, R A., Cook, C., Simons, R R L. (2021).One Health, 13, 100266.

DOI: https://doi.org/10.1016/j.onehlt.2021.100266

Project: COHESIVE

Ongoing diphtheria outbreak in Yemen: a cross-sectional and genomic epidemiology study.

Badell, E., Alharazi, A., Criscuolo, A., Almoayed, K., Lefrancq, N., Bouchez, V., Guglielmini, J., Hennart, M., Carmi-Leroy, A., Zidane, N., Pascal-Perrigault, M., Lebreton, M., Martini, H., Salje, H., Toubiana, J., Dureab, F., Dhabaan, G., & Brisse, S., Rawah, A. & Al-Somainy, A. (2021).The Lancet Microbe. 2(8), E386-E396.

DOI: https://doi.org/10.1016/S2666-5247(21)00094-X

Project: Codes4strains

The Glossaryfication Web Service: an automated glossary creation tool to support the One Health community.

Scaccia, N., Günther, T., Lopez de Abechuco, E., Filter, M. (2021). Research Ideas and Outcomes, 7: e70183.

DOI: https://doi.org/10.3897/rio.7.e70183

Project: ORION

Monitoring of Antimicrobial Resistance to Aminoglycosides and Macrolides in Campylobacter coli and Campylobacter jejuni From Healthy Livestock in Spain (2002–2018).

Lopez-Chavarrias, V., Ugarte-Ruiz, M., Barcena, C., Olarra, A., Garcia, M., Saez, JL., de Frutos, C., Serrano, T., Perez, I., Moreno, MA., Dominguez, L., Alvarez, J. (2021). Frontiers in Microbiology. 12:689262.

DOI: https://doi.org/10.3389/fmicb.2021.689262

Project: DISCOVER

One Health practices across key agencies in Sweden – Uncovering barriers to cooperation, communication and coordination.

Humboldt-Dachroeden, S. (2021). Scandinavian Journal of Public Health, pp 1-7.

DOI: https://doi.org/10.1177/14034948211024483

Project: SUSTAIN

Clinically Relevant Escherichia coli Isolates from Process Waters and Wastewater of Poultry and Pig Slaughterhouses in Germany.

Savin, M., Bierbaum, G., Kreyenschmidt, J., Sib, E., Schmoger, S., Käsbohrer, A., Hammerl, J-A. (2021). Microorganisms. 9, 698.

DOI: https://doi.org/10.3390/microorganisms9040698

Projects: ARDIG and FULL- FORCE

Outcome of Different Sequencing and Assembly Approaches on the Detection of Plasmids and Localization of Antimicrobial Resistance Genes in Commensal Escherichia coli.

Juraschek, K., Borowiak, M., Tausch, SH., Malorny, B., Käsbohrer, A., Otani, S., Schwarz, S., Meemken, D., Deneke, C., Hammerl, JA. (2021). Microorganisms. 9, 598.

DOI: https://doi.org/10.3390/microorganisms903059

Projects: ARDIG and FULL- FORCE

Comparison of Phenotypical Antimicrobial Resistance between Clinical and Non-Clinical E. coli Isolates from Broilers, Turkeys and Calves in Four European Countries.

Mesa-Varona, O., Mader, R., Velasova, M., Madec, J.Y., Granier, S.A., Perrin-Guyomard, A., Norstrom, M., Kaspar, H., Grobbel, M., Jouy, E., Anjum, M.F., Tenhagen, B.A. (2021). Microorganisms. 9(4):678.

DOI: https://doi.org/10.3390/microorganisms9040678

Project: ARDIG

A ready-to-use dose-response model of Campylobacter jejuni implemented in the FSKX-standard.

Sundermann, EM., Nauta, M., Swart, A. (2021). Food Modelling Journal 2: e63309.

DOI: https://doi.org/10.3897/fmj.2.63309

Project: MATRIX

In vivo and in vitro models show unexpected degrees of virulence among Toxoplasma gondii type II and III isolates from sheep. 

Fernández-Escobar, M., Calero-Bernal, R., Regidor-Cerrillo, J., Vallejo, R., Benavides, J., Collantes-Fernández, E., Ortega-Mora, L. M. (2021). Veterinary Research 5282.

DOI: https://doi.org/10.1186/s13567-021-00953-7

Project: TOXOSOURCES

Parasitic Intestinal Protists of Zoonotic Relevance Detected in Pigs by Metabarcoding and Real-Time PCR.

Stensvold, CR., Jirků-Pomajbíková, K., Tams, KW., Jokelainen, P., Berg, RPKD., Marving, E., Petersen, Randi F., Andersen, L O’Brien., Angen, Ø., Nielsen, HV. (2021). Microorganisms. 9, 1189.

DOI: https://doi.org/10.3390/microorganisms9061189

Project: PARADISE

Isolation Procedure for CP E. coli from Caeca Samples under Review towards an Increased Sensitivity.

Pauly, N., Klaar, Y., Skladnikiewicz-Ziemer, T., Juraschek, K., Grobbel, M., Hammerl, JA., Hemmers, L., Käsbohrer, A., Schwarz, S., Meemken, D., Tenhagen, B-A., Irrgang, A. (2021). Microorganisms. 9, 1105.

DOI: https://doi.org/10.3390/microorganisms9051105

Project: IMPART

A one health glossary to support communication and information exchange between the human health, animal health and food safety sectors.

Buschhardt, Tasja., Günther, Taras., Skjerdal, Taran., Torpdahl, Mia., Gethmann, Jörn., Filippitzi, Maria-Eleni., Maassen, Catharina., Jore, Solveig., Ellis-Iversen, Johanne. (2021). One Health, 13.

DOI: https://doi.org/10.1016/j.onehlt.2021.100263

Project: ORION  & COHESIVE

Effect of Biscuit Flour and Fermented Defatted “Alperujo” Co-Administration on Intestinal Mucosa Morphology and Productive Performance in Laying Hens.

Porras, N., Rebollada-Merino, A., Bárcena, C., Mayoral-Alegre, FJ., Lomillos, JM., Domínguez, L., Rodríguez-Bertos, A. (2021). Animals. 11, 1075.

DOI: https://doi.org/10.3390/ani11041075

Project: MoMIR

New global targets for NTDs in the WHO roadmap 2021–2030.

Casulli, A, (2021). PLoS Neglected Tropical Diseases. 15(5):e0009373.

DOI: https://doi.org/10.1371/journal.pntd.0009373

Project: MeME

One Health Surveillance Codex: promoting the adoption of One Health solutions within and across European countries.

Filter, Matthias., Buschhardt, Tasja., Dórea, Fernanda., Lopez de Abechuco, Estibaliz., Günther, Taras., Sundermann, Esther M.; Gethmann, Jörn., Dups-Bergmann, Johanna., Lagesen, Karin., Ellis-Iversen, Johanne. (2021). One Health, 12.

DOI: https://doi.org/10.1016/j.onehlt.2021.100233

Project: ORION

Assessing Environmental Factors within the One Health Approach.

Humboldt-Dachroeden, S., Mantovani, A. (2021). Medicina. 57(3), 240.

DOI: https://doi.org/10.3390/medicina57030240

Project: SUSTAIN (PhD)

Molecular analysis suggests that Namibian cheetahs (Acinonyx jubatus) are definitive hosts of a so far undescribed Besnoitia species. 

Schares, G., Joeres, M., Rachel, F., Tuschy, M., Czirják, GÁ., Maksimov, P., Conraths, FJ., Wachter, B. (2021). Parasites and Vectors. 14, 201.

DOI: https://doi.org/10.1186/s13071-021-04697-3

Project: TOXOSOURCES

Expanding the Known Repertoire of C-Type Lectin Receptors Binding to Toxoplasma gondii Oocysts Using a Modified High-Resolution Immunofluorescence Assay.

Fabian, B. T., Lepenies, B., Schares, G., Dubey, J. P., Spano, F., Seeber, F. (2021). mSphere. 6:e01341-20.

DOI: https://doi.org/10.1128/mSphere.01341-20

Project: TOXOSOURCES

Infection prevention and control practices of ambulatory veterinarians: A questionnaire study in Finland. 

Verkola, M., Järvelä, T., Järvinen, A., Jokelainen, P., Virtala, A.-M., Kinnunen, P. M., Heikinheimo, A. (2021).Veterinary Medicine and Science. p1-12.

DOI: https://doi.org/10.1002/vms3.464

Project: TOXOSOURCES

Experimental Infection with Toxoplasma gondii in Broiler Chickens (Gallus Domesticus): Seroconversion, Tissue Cyst Distribution, and Prophylaxis. 

Nedişan, M. E., Györke, A., Ştefănuţ, C. L., Kalmár, Z., Friss, Z., Blaga, R., Blaizot, A., Toma-Naic, A., Mircean, V.; Schares, G., Djurković-Djaković, O., Klun, I., Villena, I., Cozma, V. (2021). Parasitology Research. 120, pp 593- 603.

DOI: https://doi.org/10.1007/s00436-020-06984-x

Project: TOXOSOURCES

Campylobacter jejuni isolates from whole-genome sequencing data. 

Dahl, L.G., Joensen, K.G., Østerlund, M.T., Kill, K., Møller Nielsen, E. (2021). European Journal of Clinical  Microbiology and Infectious Diseases. 40673–682.

DOI: https://doi.org/10.1007/s10096-020-04043-y

Project: BeOne

A real-time quantitative polymerase chain reaction for the specific detection of Hammondia hammondi and its differentiation from Toxoplasma gondii

Schares, G., Globokar Vrhovec, M., Tuschy, M., Joeres, M., Bärwald, A., Koudela, B., Dubey, J. P., Maksimov, P., Conraths, F. J. (2021). Parasites and Vectors. 15, 74.

DOI: https://doi.org/10.1186/s13071-020-04571-8

Project: TOXOSOURCES

Molecular Methods for the Detection of Toxoplasma gondii Oocysts in Fresh Produce: An Extensive Review. 

Slana, I., Bier, N., Bartosova, B., Marucci, G.,Possenti, P., Mayer-Scholl, A., Jokelainen, P., Lalle, M. (2021). Microorganisms. 9 (1), 167.

DOI: https://doi.org/10.3390/microorganisms9010167

Project: TOXOSOURCES

Exposure to Quaternary Ammonium Compounds Selects Resistance to Ciprofloxacin in Listeria monocytogenes.

Guérin, A., Bridier, A., Le Grandois, P., Sévellec, Y., Palma, F., Félix, B., Roussel, S., Soumet, C. (2021). Pathogens. 10, 220.

DOI: https://doi.org/10.3390/pathogens10020220

Project: LISTADAPT

Detection of Norovirus Variant GII.4 Hong Kong in Asia and Europe, 2017-2019.

Chi-Wai Chan, M,. Roy, S., Bonifacio, J., Zhang, YY., Chhabra, P., Chan, JCM., Celma, C., Igoy, MA., Lau SL., Mohammad, KN., Vinjé, J., Vennema, H., Breuer, J., Koopmans, M., de Graaf, M. (2021). Emerging Infectious Diseases. 27(1), pp 283- 293.

DOI: https://doi.org/10.3201/eid2701.203351

Project: METASTAVA

Identification of Echinococcus granulosus Genotypes G1 and G3 by SNPs Genotyping Assays.

Bonelli, P., Dei Giudici, S., Peruzzu, A., Mura, L., Santucciu, C., Maestrale, C., Masala, G. (2021). Pathogens. 10, 125.

DOI: https://doi.org/10.3390/pathogens10020125

Project: MEME

Monitoring SARS-CoV-2 Circulation and Diversity through Community Wastewater Sequencing, the Netherlands and Belgium.

Izquierdo-Lara, R,, Elsinga, G., Heijnen, L., et al. (2021). Emerging Infectious Diseases. 27(5), 1405-1415.

DOI: https://doi.org/10.3201/eid2705.204410

Project: METASTAVA

COVID-19 in health-care workers in three hospitals in the south of the Netherlands: a cross-sectional study.

Sikkema, RS., Pas, SD., Nieuwenhuijse, DF., O’Toole, A., Verweij, JJ., van der Linden, A., Chestakova, I., Schapendonk, C., Pronk, M., Lexmond, P., Bestebroer, T., Overmars, RJ., van Nieuwkoop, S., van den Bijllaardt, W., Bentvelsen RG., van Rijen, MML., Buiting, AGM., van Oudheusden, AJG., Diederen, BM., Bergmans, AMC., van der Eijk, A., Molenkamp, R., Rambaut, A., Timen, A., Kluytmans, JAJW., Oude Munnink, BB., Kluytmans van den Bergh, MFQ., Koopmans, MPG. (2021). The Lancet: Infectious Disease. 20(11), p1273-1280

DOI: https://doi.org/10.1016/S1473-3099(20)30527-2

Project: METASTAVA

Co-occurrence of the blaVIM-1 and blaSHV-12 genes on an IncHI2 plasmid of an Escherichia coli isolate recovered from German livestock.

Pauly, N., Hammerl, JA., Schwarz, S., Grobbel, M., Meemken, D., Malorny, B., Tenhagen, BA., Käsbohrer, A., Irrgang, A. (2020). Journal of Antimicrobial Chemotherapy. 76(2), 531–533.

DOI: https://doi.org/10.1093/jac/dkaa436

Project: IMPART

Molecular Characterisation of Giardia duodenalis in Children and Adults Sampled in Algeria.

Belkessa, S., Thomas-Lopez, D., Houali, K., Ghalmi, F., Stensvold, C R. (2021). Microorganisms. 9 (1), 54.

DOI: https://doi.org/10.3390/microorganisms9010054 

Project: PARADISE

2020

List of OHEJP Publications 2020

DOI: https://doi.org/10.5281/zenodo.6281162

Advanced Methods for Detection of Bacillus cereus and Its Pathogenic Factors.

Ramarao, N., Tran, S-L, Marin, M., Vidic, J. (2020). Sensors. 20(9), 2667.

DOI: https://doi.org/10.3390/s20092667

Project: TOX-detect

Concomitant carriage of KPC-producing and non-KPC-producing Klebsiella pneumoniae ST512 within a single patient. 

Jousset, A. B., Bonnin, R. A., Takissian, J., Girlich, D., Mihaila, L., Cabanel, N., Dortet, L., Glaser, P., & Naas, T. (2020). The Journal of antimicrobial chemotherapy75(8), 2087–2092.

DOI: https://doi.org/10.1093/jac/dkaa137

Project: MedVetKlebs

Molecular characterisation and antimicrobial susceptibility of C. jejuni isolates from Italian wild bird populations. 

Marotta, F., Janowicz, A., Di Marcantonio, L., Ercole, C., Di Donato, G., Garofolo, G., Di Giannatale, E., (2020). Pathogens. 9(4), 304.

DOI: https://doi.org/10.3390/pathogens9040304

Project: AIR SAMPLE

Isolation, Genotyping, and Mouse Virulence Characterisation of Toxoplasma gondii From Free Ranging Iberian Pigs.

Fernández-Escobar, M., Calero-Bernal, R., Regidor-Cerrillo, J., Vallejo, R., Benavides, J., Collantes-Fernández, E., Ortega-Mora, LM. (2020). Frontiers in Veterinary Science. 7:604782.

DOI: https://doi.org/10.3389/fvets.2020.604782

Project: TOXOSOURCES

Genetic Characterisation of a Listeria monocytogenes Serotype IV b Variant 1 Strain Isolated from Vegetal Matrix in Italy.

Torresi, M., Orsini, M., Acciari, V., Centorotola, G., Di Lollo, V., Di Domenico, M, Manila Bianchi, D., Wakwamba Ziba, M., Tramuta, C., Cammà, C., Pomilioa, F. (2020). Microbiology Resource Announcements. 9:e00782-20.

DOI: https://doi.org/10.1128/MRA.00782-20

Project: LISTADAPT

Corynebacterium rouxii sp. nov., a novel member of the diphtheriae species complex.

Badell, E., Hennart, M., Rodrigues, C., Passet, V., Dazas, M., Panunzi, L., Bouchez, V., Carmi-Leroy, A., Toubiana, J., & Brisse, S. (2020). Research in microbiology171(3-4), 122–127.

DOI: https://doi.org/10.1016/j.resmic.2020.02.003

Project: Codes4strains (PhD)

Population genomics and antimicrobial resistance in Corynebacterium diphtheriae. 

Hennart, M., Panunzi, LG., Rodrigues, C., Gaday, Q., Baines, SL., Barros-Pinkelnig, M., Carmi-Leroy, A., Dazas, M., Wehenkel, AM., Didelot, X., Toubiana, J., Badell, E., Brisse, S. (2020). Genome Medicine. 12, p 1-18.

DOI: https://doi.org/10.1186/s13073-020-00805-7

Project: Codes4strains (PhD)

Rapid SARS-CoV-2 whole-genome sequencing and analysis for informed public health decision-making in the Netherlands.

Oude Munnink, BB., Nieuwenhuijse, DF., Stein, M., O’Toole, A., Haverkate, M., Mollers, M., Kamga, SK., Schapendonk, C., Pronk, M., Lexmond, P., van der Linden, A., Bestebroer, T., Chestakova, I., Overmars, RJ., van Nieuwkoop, S., Molenkamp, R., van der Eijk, AA,. Geurtsvan Kessel, C., Vennema, H., Meijer, A., Rambaut, A., van Dissel, J., Sikkema, RS., Timen, A., Koopmans, M. (2020). Nature Medicine. 26, p 1405–1410.

DOI: https://doi.org/10.1038/s41591-020-0997-y

Project: METASTAVA

Mobile colistin resistance gene mcr-1 detected on an IncI1 plasmid in Escherichia coli from meat.

Brouwer, MSM.,  Goodman, RN., Kant, A., Mevius, D., Newire, E., Roberts, AP., Veldman, KT. (2020). Journal of Global Antimicrobial Resistance. 23, 145-148.

DOI: https://doi.org/10.1016/j.jgar.2020.08.018

Project: ARDIG

Identification of a blaVIM-1-Carrying IncA/C2 Multiresistance Plasmid in an Escherichia coli Isolate Recovered from the German Food Chain.

Pauly, N., Hammerl, JA., Grobbel, M., Käsbohrer, A., Tenhagen, BA., Malorny, B., Schwarz, S., Meemken, D., Irrgang, A. (2020). Microorganisms. 9, 29.

DOI: https://doi.org/10.3390/20microorganisms9010029

Project: IMPART

Diversity of mucoid to non-mucoid switch among carbapenemase-producing Klebsiella pneumoniae.

Chiarelli, A., Cabanel, N., Rosinski-Chupin, I., Zongo PD., Naas. T., Bonnin, RA., Glaser, P. (2020). BMC Microbiology, 20, 325.

DOI: https://doi.org/10.1186/s12866-020-02007-y

Project: MedVetKlebs

The importance of using whole genome sequencing and extended spectrum beta-lactamase selective media when monitoring antimicrobial resistance.

Duggett, N., AbuOun, M., Randall, L., Horton, R., Lemma, F., Rogers, J., Crook, D., Teale, C., Anjum, MF. (2020). Scientific Reports. 10, 19880.

DOI: https://doi.org/10.1038/s41598-020-76877-7

Project: ARDIG

Temporal dynamics of the fecal microbiota in veal calves in a 6-month field trial.

Massot, M., Haenni, M., Nguyen, TT., Madec, JY., Mentré, F., Denamur, E. (2020). Animal Microbiome. 2(32).

DOI: https://doi.org/10.1186/s42523-020-00052-6

Project: ARDIG

Modelling spread and surveillance of Mycobacterium avium subsp. paratuberculosis in the Swedish cattle trade network.

Rosendal, T., Widgren, S., Ståhl, K., Frössling, J. (2020). Preventative Veterinary Medicine. 183, 105152.

DOI: https://doi.org/10.1016/j.prevetmed.2020.105152

Project: NOVA

Novel IncFII plasmid harbouring blaNDM-4 in a carbapenem-resistant Escherichia coli of pig origin, Italy.

Diaconu, EL., Carfora, V., Alba, P., Di Matteo, P., Stravino, F., Buccella, C., Dell’Aira, E., Onorati, R., Sorbara, L., Battisti, A., Franco, A. (2020). Journal of Antimicrobial Chemotherapy. 75(12), 3475–3479.

DOI: https://doi.org/10.1093/jac/dkaa374

Project: IMPART and FULL-FORCE

First Detection of GES-5-Producing Escherichia coli from Livestock—An Increasing Diversity of Carbapenemases Recognized from German Pig Production. 

Irrgang, A., Tausch SH., Pauly, N., Grobbel, M., Kaesbohrer, A,. Hammerl, JA. (2020). Microorganisms. 8 (10), 159.

DOI: https://doi.org/10.3390/microorganisms8101593

Project: IMPART

ChromID® CARBA Agar Fails to Detect Carbapenem-Resistant Enterobacteriaceae With Slightly Reduced Susceptibility to Carbapenems.

Pauly, N., Hammerl, JA., Grobbel, M., Tenhagen, BA., Käsbohrer, A., Bisenius, S., Fuchs, J., Horlacher, S., Lingstädt, H., Mauermann, U., Mitro, S., Müller, M., Rohrmann, S., Schiffmann, AP., Stührenberg, B., Zimmermann, P., Schwarz, S., Meemken, D., Irrgang, A. (2020). Frontiers in Microbiology. 11, 1678.

DOI: https://doi.org/10.3389/fmicb.2020.01678

Project: IMPART

Spatial Trends in Salmonella Infection in Pigs in Spain.

Teng, K. T., Martinez Avilés, M., Ugarte-Ruiz, M., Barcena, C., de la Torre, A., Lopez, G., Moreno, M. A., Dominguez, L., & Alvarez, J. (2020). Frontiers in veterinary science, 7, 345.

DOI: https://doi.org/10.3389/fvets.2020.00345

Project: NOVA

Spill-Over from Public Health? First Detection of an OXA-48-Producing Escherichia coli in a German Pig Farm. 

Irrgang, A., Pauly, N., Tenhagen, BA., Grobbel, M., Kaesbohrer, A., Hammerl, JA. (2020). Microorganisms. 8(6), 855.

DOI: https://doi.org/10.3390/microorganisms8060855

Project: IMPART

Comparison of Two DNA Extraction Methods and Two PCRs for Detection of Echinococcus multilocularis in the Stool Samples of Naturally Infected Red Foxes.

Skrzypek, K., Karamon, J.,  Samorek-Pieróg, M., Dąbrowska, J., Kochanowski, M., Sroka, J., Bilska-Zając, E., Cencek Tomasz. (2020).  Animals. 10, 2381.

DOI: https://doi.org/10.3390/ani10122381

Project: MeME

The state of One Health research across disciplines and sectors – a bibliometric analysis.

Sarah Humboldt-Dachroeden, S., Olivier, R., Frid-Nielsen, SS. (2020). One Health, 10, pp. 100146.

DOI: 10.1016/j.onehlt.2020.100146

Project: SUSTAIN (PhD)

Using stochastic dynamic modelling to estimate the sensitivity of current and alternative surveillance program of Salmonella in conventional broiler production. 

Apenteng, OO., Arnold, ME., Vigre, H. (2020). Scientific Reports, 10, pp. 19441.

DOI: https://doi.org/10.1038/s41598-020-76514-3

Project: NOVA

Whole-Genome Sequencing to Detect Numerous Campylobacter jejuni Outbreaks and Match Patient Isolates to Sources, Denmark, 2015–2017. 

Joensen, KG., Kiil, K., Gantzhorn, MR.,Nauerby, B., Engberg, J., Holt, HM.,Nielsen, HL.,Petersen, AM., Kuhn, KG.,Sandø, G.,Ethelberg, S., Nielsen, EM. (2020). Emerging Infectious Diseases, 26(3), 523-532.

DOI: https://dx.doi.org/10.3201/eid2603.190947

Project: ORION

Novel enteric viruses in fatal enteritis of grey squirrels.

Dastjerdi, A., Benfield, C., Everest, D., Stidworthy, MF., Zell, R. (2020). Journal of General Virology, 101, pp. 746–75.

DOI: https://doi.org/10.1099/jgv.0.001431

Project: MAD-Vir 

An alternative workflow for molecular detection of SARS-CoV-2 – escape from the NA extraction kit-shortage, Copenhagen, Denmark, March 2020.

Fomsgaard, AS., Rosenstierne, MW. (2020). Eurosurveillance. 25(14), pp: 2000398.

DOI: https://doi.org/10.2807/1560-7917.ES.2020.25.14.2000398

Project: TELE-Vir

Cost-effectiveness analysis of using probiotics, prebiotics, or synbiotics to control Campylobacter in broilers. 

van Wagenberg, CPA., van Horne, P.L.M., van Asseldonk, M.A.P.M. (2020). Poultry Science. 99 (8), pp. 4077- 4084.

DOI: https://doi.org/10.1016/j.psj.2020.05.003

Project: MOMIR

Climatic and topographic tolerance limits of wile boar in Eurasia: implications for their expansion.

Bosch, J., Iglesias, I., Martínez, M., de la Torre, A. (2020). Geography, Environment, Sustainability, 13(1), pp.107-114.

DOI: https://doi.org/10.24057/2071-9388-2019-52

Project: NOVA

A Multi-Scale Epidemic Model of Salmonella infection with Heterogeneous Shedding.

Labarthe, S., Laroche, B., Nguyen, T. N. T., Polizzi, B., Patout, F., Ribot, M., Stegmaier, T. (2020). ESAIM: Proceedings and Surveys, 67, p. 261-284.

DOI: https://doi.org/10.1051/proc/202067015

Project: MOMIR

A multi-center proposal for a fast screening tool in biosecured chicken flocks. Foodborne Campylobacter.

Hoorfar, J., Koláčková, I., Johannessen, GS., Garofolo, G., Marotta, F., Wieczorek, K., Osek, J., Torp, M., Spilsberg, B., Sekse, C., Thornval, NR., Karpíšková, R. (2020). Applied and Environmental Microbiology,

Project: AIRSAMPLE

Phenotypical antimicrobial resistance data of clinical and non-clinical Escherichia coli from poultry in Germany between 2014 and 2017.

Mesa-Varona, O., Kaspar, H., Grobbel, M., Tenhagen, B.A. (2020). PLoS One. 15(12):e0243772.

DOI: https://doi.org/10.1371/journal.pone.0243772

Project: ARDIG

Extensive antimicrobial resistance mobilization via multicopy plasmid encapsidation mediated by temperate phages.

Rodriguez-Rubio, L., Serna, C., Ares-Arroyo, M., Matamoros, BR., Delgado-Blas, JF., Montero, N., Bernabe-Balas, C., Wedel, EF., Mendez, IS., Muniesa, M., Gonzalez-Zorn, B. (2020). Journal of Antimicrobial Chemotherapy, 75 (11), pp. 3173–3180.

DOI: https://doi.org/10.1093/jac/dkaa311

Project: ARDIG

First report on the occurrence of Listeria monocytogenes ST121 strain in a dolphin brain. 

Sévellec, Y., Torresi, M., Félix, B., Palma, F., Centorotola, G., Bilei, S., Senese, M., Terracciano, G., Leblanc, JC., Pomilio, F., Roussel, S. (2020). Pathogens(10), 802.

DOI: https://doi.org/10.3390/pathogens9100802 

Project: LISTADAPT

Cystic Echinococcosis: Clinical, Immunological, and Biomolecular Evaluation of Patients from Sardinia (Italy).

Santucciu, C., Bonelli, P., Peruzzu, A., Fancellu, A., Marras, V., Carta, A., Mastrandrea, S., Bagella, G., Piseddu, T., Profili, S., Porcu, A., Masala, G. (2020). Pathogens. 9 (11), 907.

DOI: https://doi.org/10.3390/pathogens9110907

Project: MeME

Expression of in vivo biotinylated recombinant antigens SAG1 and SAG2A from Toxoplasma gondii for improved seroepidemiological bead-based multiplex assays.

Klein, S., Stern, D., Seeber, F. (2020). BMC Biotechnology. 2053.

DOI: https://doi.org/10.1186/s12896-020-00646-7

Project: TOXOSOURCES

Reduction of Salmonella Typhimurium cecal colonisation and improvement of intestinal health in broilers supplemented with fermented defatted ‘alperujo’, an olive oil by-product

Rebollada-Merino, A., Ugarte-Ruiz, M., Hernández, M., Miguela-Villoldo, P., Abad, D., Rodríguez-Lázaro, D., de Juan, L., Domínguez, L., Rodríguez-Bertos, A. (2020). Animals. 10 (10), 1931.

DOI: https://doi.org/10.3390/ani10101931

Project: MOMIR

A validated method to identify Echinococcus granulosus sensu lato at species level.

Santolamazza, F., Santoro, A., Possenti, A., Cacciò, S M., Casulli, A. (2020). Infection, Genetics and Evolution. 85, 104575.

DOI: https://doi.org/10.1016/j.meegid.2020.104575

Project: MeME

Bayesian Analysis of Three Methods for Diagnosis of Cystic Echinococcosis in Sheep.

Bonelli , P., Loi, F., Cancedda, MG., Peruzzu, A., Antuofermo, E., Pintore, E., Piseddu, T., Garippa, G., Masalam G. (2020). Pathogens. 9(10), 796.

DOI: https://doi.org/10.3390/pathogens9100796

Project: MeME

Species Detection within the Echinococcus granulosus sensu lato Complex by Novel Probe-Based Real-Time PCRs. 

Maksimov, P., Bergmann, H., Wassermann, M., Romig, T., Gottstein, B., Casulli, A., Conraths, FJ. (2020). Pathogens, 9(10), 791. 

DOI: https://doi.org/10.3390/pathogens9100791

Project: MeME

Dietary supplementation with fermented defatted “alperujo” induces modifications of the intestinal mucosa and cecal microbiota of broiler chickens.

Rebollada-Merino, A., Ugarte-Ruiz, M., Hernández, M., Miguela-Villoldo, P., Abad, D., Cuesta-Álvaro, P., Rodríguez-Lázaro, D., de Juan, L., Domínguez, L., Rodríguez-Bertos, A. (2020).  Poultry Science.

DOI: https://doi.org/10.1016/j.psj.2020.07.015

Project: MOMIR

Gut microbiota composition before infection determines the Salmonella super‐ and low‐shedder phenotypes in chicken.

Kempf, F., Menanteau, P., Rychlik, I., Kubasová, T., Trotereau, J., Virlogeux‐Payant, I., Schaeffer, S., Schouler, C., Drumo, R., Guitton, E., Velge, P. (2020). Microbial Biotechnology. 135), 1611– 1630. 

DOI: https://doi.org/10.1111/1751-7915.13621

Project: MOMIR

Isolation and genetic characterization of Toxoplasma gondii in Spanish sheep flocks.

Fernández-Escobar, M., Calero-Bernal, R., Benavides, J., Regidor-Cerrillo, J., Guerrero-Molina, M. C., Gutiérrez-Expósito, D., Collantes-Fernández, E., Ortega-Mora, L. M. (2020). Parasites and Vectors.

DOI: https://doi.org/10.1186/s13071-020-04275-z

Project: TOXOSOURCES

Fluorescent bead-based serological detection of Toxoplasma gondii infection in chickens.

Fabian, B. T., Hedar, F., Koethe, M., Bangoura, B., Maksimov, P., Conraths, F. J., Villena, I., Aubert, D., Seeber, F., Schares, G. (2020). Parasites and Vectors.

DOI: https://doi.org/10.1186/s13071-020-04244-6

Project: TOXOSOURCES

Veterinary Students Have A Higher Risk Of Contracting Cryptosporidiosis When Calves With High Fecal Cryptosporidium Loads Are Used For Fetotomy Exercises.

Lopez, T., Müller, L., Vestergaard, LS., Christoffersen, M., Andersen, A., Jokelainen, P., Agerholm, JS., Stensvold, CR. (2020). Applied and Environmental Microbiology.

DOI: https://doi.org/10.1128/AEM.01250-20

Project: PARADISE

The One Health European Joint Programme (OHEJP), 2018–2022: an exemplary One Health initiative.

Brown, HL., Passey, JL., Getino, M., Pursley, I., Basu, P., Horton, DL., La Ragione, RM. (2020). Journal of Medical Microbiology, pp 1-3.

DOI: https://doi.org/10.1099/jmm.0.001228

MLST-based genetic relatedness of Campylobacter jejuni isolated from chickens and humans in Poland

Wieczorek, K., Wołkowicz, T., Osek, J. (2020). PLOS ONE, 15(1), e0226238

DOI: https://doi.org/10.1371/journal.pone.0226238

Project: AIRSAMPLE

Effects on Intestinal Mucosal Morphology, Productive Parameters and Microbiota Composition after Supplementation with Fermented Defatted Alperujo (FDA) in Laying Hens

Rebollada-Merino A., Bárcena C., Ugarte-Ruiz M., Porras-González N., Mayoral-Alegre F., Tome-Sánchez I., Domínguez L. and Rodríguez-Bertos A. (2020). Antibiotics, 8(4), pp. 215

DOI: https://doi.org/10.3390/antibiotics8040215

Project: MedVetKlebs

Broad-Spectrum Cephalosporin-Resistant Klebsiella spp. Isolated from Diseased Horses in Austria

Loncaric, I., Rosel, AC., Szostak, MP., Licka, TF., Allerberger, F., Ruppitsch, W., Spergser, J. (2020). Animals, 10(2), pp. 332

DOI: https://doi.org/10.3390/ani10020332

Project: MedVetKlebs

Campylobacter in chicken- Critical parameters for international, multi-centre evaluation of air sampling and detection method

Johannessen, GS., Giuliano Garofolo, G., Di Serafino, G.,Koláčková, I., Karpíšková, R., Wieczorek, K., Osek, J.,  Christensen, J., Torp, M., Hoorfar, J. (2020). Food Microbiology, 90, 1-6

DOI: https://doi.org/10.1016/j.fm.2020.103455

Project: AIRSAMPLE

Evaluation of a commercial exogenous internal process control for diagnostic RNA virus metagenomics from different animal clinical samples

Van Borm, S., Fu, Q., Winand, R., Vanneste, K., Hakhverdyan, M., Höper, D., Vandenbussche, F. (2020). Journal of Virological Methods, 283

DOI: https://doi.org/10.1016/j.jviromet.2020.113916

Project: METASTAVA

Klebsiella pneumoniae carriage in low-income countries: antimicrobial resistance, genomic diversity and risk factors

Huynh, BT., Passet, V., Rakotondrasoa, A.,. Diallo, T., Kerleguer, A., Hennart, M., Lauzanne, A., Herindrainy, P., Seck, A., Bercion, R., Borand, L., Pardos de la Gandara, M., Delarocque-Astagneau, E., Guillemot, D., Vray, M., Garin, B., Collard, JM., Rodrigues, C., Brisse, S. (2020). Gut Microbes, 11(5), pp. 1287-1299

DOI: https://doi.org/10.1080/19490976.2020.1748257

Project: MedVetKlebs

The ZKIR Assay, a Real-Time PCR Method for the Detection of Klebsiella pneumoniae and Closely Related Species in Environmental Samples

Barbier, E., Rodrigues, C., Depret, G., Passet, V., Gal, L., Piveteau, P., Brisse, S. (2020). Applied and Environmental Microbiology, 86(7), pp. e02711-19.

DOI: https://doi.org/10.1128/AEM.02711-19

Project: MedVetKlebs

Stepwise evolution and convergent recombination underlie the global dissemination of carbapenemase-producing Escherichia coli

Patiño-Navarrete, R., Rosinski-Chupin, I., Cabanel, N., Gauthier, L., Takissian, J., Madec, JY., Hamze, M., Bonnin, RA., Naas, T., Glaser, P. (2020). Genome Medicine, 12(10)

DOI: https://doi.org/10.1186/s13073-019-0699-6

Project: ARDIG

Microsatellite Investigations of Multiple Echinococcus granulosus Sensu Stricto Cysts in Single Hosts Reveal Different Patterns of Infection Events between Livestock and Humans

M’rad, S., Oudni-M’rad, M., Bastid, V., Bournez, L., Mosbahi, S., Nouri, A., Babba, H., Grenouillet, F., Boué, F., Umhang, G. (2020). Pathogens, 9(6), pp. 444

DOI: https://doi.org/10.3390/pathogens9060444

Project: MeME

Analysis of COMPASS, a New Comprehensive Plasmid Database Revealed Prevalence of Multireplicon and Extensive Diversity of IncF Plasmids.

Douarre, P E., Mallet, L., Radomski, N., Felten, A., Mistou, M. (2020) Frontiers in Microbiology, 11, pp. 1-15.

DOI: https://doi.org/10.3389/fmicb.2020.00483.

Project: RaDAR

Recognising the substantial burden of neglected pandemics cystic and alveolar echinococcosis.

Casulli, A. (2020) The Lancet, 8 (4): PE470-E471

DOI: https://doi.org/10.1016/S2214-109X(20)30066-8

Project: MeME

2019

Point-of-Need DNA Testing for Detection of Foodborne Pathogenic Bacteria.

Vidic, J., Vizzini, P., Manzano, M., Kavanaugh, D., Ramarao, N., Zivkovic, M., Radonic, V., Knezevic, N., Giouroudi, I., Gadjanski, I. (2019). Sensors.  19(5), 1100.

DOI: https://doi.org/10.3390/s19051100

Project: TOX-detect

Large-Scale Genomic Analyses and Toxinotyping of Clostridium perfringens Implicated in Foodborne Outbreaks in France.

Mahamat Abdelrahim, A., Radomski, N., Delannoy, S., Djellal, S., Le Négrate, M., Hadjab, K., Fach, P., Hennekinne, J-A., Mistou, M-Y., Firmesse, O. (2019).  Frontiers in Microbiology. 10:777.

DOI: https://doi.org/10.3389/fmicb.2019.00777

Project: TOX-detect

Opportunities for Improved Disease Surveillance and Control by Use of Integrated Data on Animal and Human Health.

Houe, H., Nielsen, SS., Nielsen, LR., Ethelberg, S., Mølbak, K. (2020). Frontiers in Veterinary Medicine, 6: 301, pp. 1-8.

DOI: https://doi.org/10.3389/fvets.2019.00301

Project: ORION

An outbreak of monophasic Salmonella Typhimurium associated with raw pork sausage and other pork products, Denmark 2018–19.

Helmuth, IG., Espenhain, L., Ethelberg, S., Jensen, T., Kjeldgaard, J., Litrup, E., Schjørring, S., Müller, L. (2019). Epidemiology and Infection, 147, pp. e315.

DOI: https://doi.org/10.1017/S0950268819002073

Project: NOVA

Whole genome sequencing reveals resemblance between ESBL-producing and carbapenem resistant Klebsiella pneumoniae isolates from Austrian rivers and clinical isolates from hospitals.

Lepuschitz, S., Schill, S., Stoeger, A., Pekard-Amenitsch, S., Huhulescu, S., Inreiter, N., Hartl, R., Kerschner, H., Sorschag, S., Springer, B., Brisse, S., Allerberger, F., Mach, RL., Ruppitsch, W. (2019). Science of the Total Environment, 662, pp.  227-235.

DOI: https://doi.org/10.1016/j.scitotenv.2019.01.179

Project: MedVetKlebs

Antimicrobial Usages and Antimicrobial Resistance in Commensal Escherichia coli From Veal Calves in France: Evolution During the Fattening Process. 

Gay, E., Bour, M., Cazeau, G., Jarrige, N., Martineau, C., Madec, JY., Haenni, M. (2019). Frontiers in Microbiology, 10, pp. 792.

DOI: https://doi.org/10.3389/fmicb.2019.00792

Project: ARDIG

The shufflon of IncI1 plasmids is rearranged constantly during different growth conditions

Brouwer, MSM., Jurburg, SD., Harders, F., Kant, A., Mevius, DJ., Roberts, AP., Bossers, A. (2019). Plasmid, 120, pp. 51-55

DOI: https://doi.org/10.1016/j.plasmid.2019.03.003

Project: ARDIG

Description of Klebsiella spallanzanii sp. nov. and of Klebsiella pasteurii sp. nov.

Merla C, Rodrigues C, Passet V, Corbella M, Thorpe H A, Kallonen T V S, Zong Z, Marone P, Bandi C, Sassera D, Corander J, Feil E J and Brisse S. (2019). Frontiers in Microbiology

DOI: https://doi.org/10.3389/fmicb.2019.02360

Project: MedVetKlebs

Identifying emerging trends in antimicrobial resistance using Salmonella surveillance data in poultry in Spain

Alvarez J., Lopez G., Muellner P., de Frutos C., Ahlstrom C., Serrano T., Moreno MA., Duran M., Saez JL., Dominguez L., Ugarte-Ruiz M. (2019). Transboundary and Emerging Diseases, 67(1), pp. 250-262

DOI: https://doi.org/10.1111/tbed.13346

Project: NOVA

Monitoring Antimicrobial Resistance and Drug Usage in the Human and Livestock Sector and Foodborne Antimicrobial Resistance in Six European Countries.

Mesa Varona, O., Chaintarli, K., Muller-Pebody, B., Anjum, MF., Eckmanns, T., Norström, M., Boone, I. (2019). Dovepress, 13, pp. 957-993

DOI: https://doi.org/10.2147/IDR.S237038

Project: ARDIG

Salmonella Surveillance Systems in Swine and Humans in Spain: A Review.

Marta Martínez-Avilés, Macarena Garrido-Estepa, Julio Álvarez, Ana de la Torre. (2019). Veterinary Sciences. 6, 20

DOI:10.3390/vetsci6010020

Project: NOVA

Field samplings of Ixodes ricinus ticks from a tick-borne encephalitis virus micro-focus in Northern Zealand, Denmark.

Petersen A, Rosenstierne MW, Rasmussen M, Fuursted K, Nielsen HV, O’Brien Andersen L, Bødker R, Fomsgaard A. (2019) Ticks and Tick Borne Disease, 10(5):1028-1032.

DOI: 10.1016/j.ttbdis.2019.05.005.

Project: MAD-Vir

Attributable sources of community-acquired carriage of Escherichia coli containing β-lactam antibiotic resistance genes: a population-based modelling study.

Mughini-Gras L, Dorado-García A, van Duijkeren E, van den Bunt G, Dierikx CM, Bonten MJM, Bootsma MCJ, Schmitt H, Hald T, Evers EG, de Koeijer A, van Pelt W, Franz E, Mevius DJ, Heederik DJJ; ESBL  Consortium. (2019) Lancet Planetary Health. 3(8):e357-e369.

DOI: 10.1016/S2542-5196(19)30130-5

Project: RaDAR

List of new names and new combinations previously effectively, but not validly, published.

Oren and Garrity. (2019) International Journal of Systematic and Evolutionary Microbiology, 69:2627–2629

DOI:DOI 10.1099/ijsem.0.003624

Project: MedVetKlebs

Outbreak of Yersinia bactin-producing Klebsiella pneumoniae in a Neonatal Intensive Care Unit

Wisgrill L, Lepuschitz S, Blaschitz M, Rittenschober-Böhm J, Diab-El Schahawi M, Schubert S, et al. (2019) The Pediatric Infectious Disease Journal, 38:638-42

DOI: https://doi.org/10.1097/INF.0000000000002258

Project: MedVetKlebs

Toxoplasma gondii infection and toxoplasmosis in farm animals: Risk factors and economic impact

Stelzer, S., Basso, W., Benavides Silván, J., Ortega-Mora, L.M., Maksimov, P., Gethmann, J., Conraths, F.J.,  Schares, G. (2019). . Food and Waterborne Parasitology, 12, pp. e00037.

DOI: https://doi.org/10.1016/j.fawpar.2019.e00037

Project: ORION

Description of Klebsiella africanensis sp. nov., Klebsiella variicola subsp. tropicalensis subsp. nov. and Klebsiella variicola subsp. variicola subsp. nov.

Rodrigues, C., Passet V., Rakotondrasoa, A., Diallo, TA., Criscuolo, A., Brisse, S. (2019) Research in Microbiology.

DOI: https://doi.org/10.1016/j.resmic.2019.02.003

Project: MedVetKlebs

2018

Role of systemic infection, cross contaminations and super-shedders in Salmonella carrier state in chicken.

Menanteau, P. Kempf, F., Trotereau, J., Virlogeux-Payant, I., Gitton, E., Dalifard, J., Gabriel, I., Rychlik, I., Velge, P. (2018). Environmental Microbiology. 20 (9), 3246–3260.

DOI: https://doi.org/10.1111/1462-2920.14294

Project: MOMIR

Non-Typhi, non-Paratyphi Salmonella-related hospitalisations in Spain: trends, clinical aspects, risk factors for worse prognosis and hospital costs.

Garrido-Estepa, M., Latasa, P., Ordóñez-León, G.Y. et al. (2018) European Journal of Clinical Microbiology and Infectious Disease.

DOI: 10.1007/s10096-018-3433-1

ISSN: 1435-4373

Project: NOVA

Analysis of consumer food purchase data used for outbreak investigations, a review.

Møller Frederik T, Mølbak Kåre, Ethelberg Steen. (2018) Euro Surveill.

DOI: 10.2807/1560-7917.ES.2018.23.24.1700503

Project: NOVA

Population Genetic Structure of Listeria monocytogenes Strains Isolated From the Pig and Pork Production Chain in France.

Félix B, Feurer C, Maillet A, Guillier L, Boscher E, Kerouanton A, Denis M, Roussel S. (2018). Front. Microbiol.

DOI: 10.3389/fmicb.2018.00684

Project: LISTADAPT

Veterinarios y antibióticos: destinados a entenderse.

Moreno MA., Florez-Cuadrado D., Ugarte-Ruiz M. and Dominguez L. (2018).Profesión Veterinaria. Asis,

ISBN: 2253-7244. 2018.

Project: MoMIR-PPC

Antimicrobial Resistance in the Food Chain in the European Union.

Florez-Cuadrado D., Moreno MA., Ugarte-Ruiz M. and Dominguez L. (2018). Advances in Food and Nutrition Research. Elsevier

ISBN: 9780128139776. 2018

DOI: 10.1016/bs.afnr.2018.04.004

Project: MoMIR-PPC

Role of systemic infection, cross contaminations and super-shedders in Salmonella carrier state in chicken.

Menanteau P, Kempf F, Trotereau J, Virlogeux-Payant I, Guitton E, Dalifard J, Gabriel I, Rychlik I, and Velge P. (2018). Environmental Microbiology.

DOI: 10.1111/1462-2920.14294

Project: MoMIR-PPC

Identification of Klebsiella pneumoniae, Klebsiella quasipneumoniae, Klebsiella variicola and related phylogroups by MALDI-TOF Mass Spectrometry.

Rodrigues C, Passet V, Rakotondrasoa A, Brisse S (2018). Front. Microbiol. 9:3000

DOI: 10.3389/fmicb.2018.03000

Project: MedVetKlebs

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