2021
Refinement of the COHESIVE Information System towards a unified ontology of food terms for the public health organisations.
Mangone, I., Radomski, N., Di Pasquale, A., Santurbano, A., Calistri, P., Cammà, C., Maassen, K. (2021).
DOI: https://doi.org/10.5281/zenodo.5482422
Project: COHESIVE
Mining Public Metagenomes for Environmental Surveillance of Parasites: A Proof of Principle.
Franssen F., Janse I., Janssen D., Caccio SM., Vatta P., van der Giessen J., van Passel MWJ. (2021). Frontiers in Microbiology. 12:622356.
DOI: https://doi.org/10.3389/fmicb.2021.622356
Project: PARADISE
A shotgun metagenomics approach to detect and characterise unauthorised genetically modified microorganisms in microbial fermentation products.
Buytaers, F E., Fraiture, M-A., Berbers, B., Vandermassen, E., Hoffman, S., Papazova, N., Vanneste, K., Marchal, K., Roosens, N H C., De Keersmaecker, S C J. (2021). Food Chemistry: Molecular Sciences. 2, 100023.
DOI: https://doi.org/10.1016/j.fochms.2021.100023
Project: FARMED
A user-friendly decision support tool to assist one-health risk assessors.
Dewar, R., Gavin, C., McCarthy, C., Taylor, R A., Cook, C., Simons, R R L. (2021).One Health, 13, 100266.
DOI: https://doi.org/10.1016/j.onehlt.2021.100266
Project: COHESIVE
The Glossaryfication Web Service: an automated glossary creation tool to support the One Health community.
Scaccia, N., Günther, T., Lopez de Abechuco, E., Filter, M. (2021). Research Ideas and Outcomes, 7: e70183.
DOI: https://doi.org/10.3897/rio.7.e70183
Project: ORION
Monitoring of Antimicrobial Resistance to Aminoglycosides and Macrolides in Campylobacter coli and Campylobacter jejuni From Healthy Livestock in Spain (2002–2018).
Lopez-Chavarrias, V., Ugarte-Ruiz, M., Barcena, C., Olarra, A., Garcia, M., Saez, JL., de Frutos, C., Serrano, T., Perez, I., Moreno, MA., Dominguez, L., Alvarez, J. (2021). Frontiers in Microbiology. 12:689262.
DOI: https://doi.org/10.3389/fmicb.2021.689262
Project: DISCOVER
One Health practices across key agencies in Sweden – Uncovering barriers to cooperation, communication and coordination.
Humboldt-Dachroeden, S. (2021). Scandinavian Journal of Public Health, pp 1-7.
DOI: https://doi.org/10.1177/14034948211024483
Project: SUSTAIN
Clinically Relevant Escherichia coli Isolates from Process Waters and Wastewater of Poultry and Pig Slaughterhouses in Germany.
Savin, M., Bierbaum, G., Kreyenschmidt, J., Sib, E., Schmoger, S., Käsbohrer, A., Hammerl, J-A. (2021). Microorganisms. 9, 698.
DOI: https://doi.org/10.3390/microorganisms9040698
Projects: ARDIG and FULL- FORCE
Outcome of Different Sequencing and Assembly Approaches on the Detection of Plasmids and Localization of Antimicrobial Resistance Genes in Commensal Escherichia coli.
Juraschek, K., Borowiak, M., Tausch, SH., Malorny, B., Käsbohrer, A., Otani, S., Schwarz, S., Meemken, D., Deneke, C., Hammerl, JA. (2021). Microorganisms. 9, 598.
DOI: https://doi.org/10.3390/microorganisms903059
Projects: ARDIG and FULL- FORCE
A ready-to-use dose-response model of Campylobacter jejuni implemented in the FSKX-standard.
Sundermann, EM., Nauta, M., Swart, A. (2021). Food Modelling Journal 2: e63309.
DOI: https://doi.org/10.3897/fmj.2.63309
Project: MATRIX
Parasitic Intestinal Protists of Zoonotic Relevance Detected in Pigs by Metabarcoding and Real-Time PCR.
Stensvold, CR., Jirků-Pomajbíková, K., Tams, KW., Jokelainen, P., Berg, RPKD., Marving, E., Petersen, Randi F., Andersen, L O’Brien., Angen, Ø., Nielsen, HV. (2021). Microorganisms. 9, 1189.
DOI: https://doi.org/10.3390/microorganisms9061189
Project: PARADISE
Isolation Procedure for CP E. coli from Caeca Samples under Review towards an Increased Sensitivity.
Pauly, N., Klaar, Y., Skladnikiewicz-Ziemer, T., Juraschek, K., Grobbel, M., Hammerl, JA., Hemmers, L., Käsbohrer, A., Schwarz, S., Meemken, D., Tenhagen, B-A., Irrgang, A. (2021). Microorganisms. 9, 1105.
DOI: https://doi.org/10.3390/microorganisms9051105
Project: IMPART
A one health glossary to support communication and information exchange between the human health, animal health and food safety sectors.
Buschhardt, Tasja., Günther, Taras., Skjerdal, Taran., Torpdahl, Mia., Gethmann, Jörn., Filippitzi, Maria-Eleni., Maassen, Catharina., Jore, Solveig., Ellis-Iversen, Johanne. (2021). One Health, 13.
DOI: https://doi.org/10.1016/j.onehlt.2021.100263
Project: ORION
Effect of Biscuit Flour and Fermented Defatted “Alperujo” Co-Administration on Intestinal Mucosa Morphology and Productive Performance in Laying Hens.
Porras, N., Rebollada-Merino, A., Bárcena, C., Mayoral-Alegre, FJ., Lomillos, JM., Domínguez, L., Rodríguez-Bertos, A. (2021). Animals. 11, 1075.
DOI: https://doi.org/10.3390/ani11041075
Project: MoMIR
New global targets for NTDs in the WHO roadmap 2021–2030.
Casulli, A, (2021). PLoS Neglected Tropical Diseases. 15(5):e0009373.
DOI: https://doi.org/10.1371/journal.pntd.0009373
Project: MeME
One Health Surveillance Codex: promoting the adoption of One Health solutions within and across European countries.
Filter, Matthias., Buschhardt, Tasja., Dórea, Fernanda., Lopez de Abechuco, Estibaliz., Günther, Taras., Sundermann, Esther M.; Gethmann, Jörn., Dups-Bergmann, Johanna., Lagesen, Karin., Ellis-Iversen, Johanne. (2021). One Health, 12.
DOI: https://doi.org/10.1016/j.onehlt.2021.100233
Project: ORION
Assessing Environmental Factors within the One Health Approach.
Humboldt-Dachroeden, S., Mantovani, A. (2021). Medicina. 57(3), 240.
DOI: https://doi.org/10.3390/medicina57030240
Project: SUSTAIN (PhD)
Molecular analysis suggests that Namibian cheetahs (Acinonyx jubatus) are definitive hosts of a so far undescribed Besnoitia species.
Schares, G., Joeres, M., Rachel, F., Tuschy, M., Czirják, GÁ., Maksimov, P., Conraths, FJ., Wachter, B. (2021). Parasites and Vectors. 14, 201.
DOI: https://doi.org/10.1186/s13071-021-04697-3
Project: TOXOSOURCES
Expanding the Known Repertoire of C-Type Lectin Receptors Binding to Toxoplasma gondii Oocysts Using a Modified High-Resolution Immunofluorescence Assay.
Fabian, B. T., Lepenies, B., Schares, G., Dubey, J. P., Spano, F., Seeber, F. (2021). mSphere. 6:e01341-20.
DOI: https://doi.org/10.1128/mSphere.01341-20
Project: TOXOSOURCES
Infection prevention and control practices of ambulatory veterinarians: A questionnaire study in Finland.
Verkola, M., Järvelä, T., Järvinen, A., Jokelainen, P., Virtala, A.-M., Kinnunen, P. M., Heikinheimo, A. (2021).Veterinary Medicine and Science. p1-12.
DOI: https://doi.org/10.1002/vms3.464
Project: TOXOSOURCES
Experimental Infection with Toxoplasma gondii in Broiler Chickens (Gallus Domesticus): Seroconversion, Tissue Cyst Distribution, and Prophylaxis.
Nedişan, M. E., Györke, A., Ştefănuţ, C. L., Kalmár, Z., Friss, Z., Blaga, R., Blaizot, A., Toma-Naic, A., Mircean, V.; Schares, G., Djurković-Djaković, O., Klun, I., Villena, I., Cozma, V. (2021). Parasitology Research. 120, pp 593- 603.
DOI: https://doi.org/10.1007/s00436-020-06984-x
Project: TOXOSOURCES
A real-time quantitative polymerase chain reaction for the specific detection of Hammondia hammondi and its differentiation from Toxoplasma gondii.
Schares, G., Globokar Vrhovec, M., Tuschy, M., Joeres, M., Bärwald, A., Koudela, B., Dubey, J. P., Maksimov, P., Conraths, F. J. (2021). Parasites and Vectors. 15, 74.
DOI: https://doi.org/10.1186/s13071-020-04571-8
Project: TOXOSOURCES
Molecular Methods for the Detection of Toxoplasma gondii Oocysts in Fresh Produce: An Extensive Review.
Slana, I., Bier, N., Bartosova, B., Marucci, G.,Possenti, P., Mayer-Scholl, A., Jokelainen, P., Lalle, M. (2021). Microorganisms. 9 (1), 167.
DOI: https://doi.org/10.3390/microorganisms9010167
Project: TOXOSOURCES
Exposure to Quaternary Ammonium Compounds Selects Resistance to Ciprofloxacin in Listeria monocytogenes.
Guérin, A., Bridier, A., Le Grandois, P., Sévellec, Y., Palma, F., Félix, B., Roussel, S., Soumet, C. (2021). Pathogens. 10, 220.
DOI: https://doi.org/10.3390/pathogens10020220
Project: LISTADAPT
Detection of Norovirus Variant GII.4 Hong Kong in Asia and Europe, 2017-2019.
Chi-Wai Chan, M,. Roy, S., Bonifacio, J., Zhang, YY., Chhabra, P., Chan, JCM., Celma, C., Igoy, MA., Lau SL., Mohammad, KN., Vinjé, J., Vennema, H., Breuer, J., Koopmans, M., de Graaf, M. (2021). Emerging Infectious Diseases. 27(1), pp 283- 293.
DOI: https://doi.org/10.3201/eid2701.203351
Project: METASTAVA
Identification of Echinococcus granulosus Genotypes G1 and G3 by SNPs Genotyping Assays.
Bonelli, P., Dei Giudici, S., Peruzzu, A., Mura, L., Santucciu, C., Maestrale, C., Masala, G. (2021). Pathogens. 10, 125.
DOI: https://doi.org/10.3390/pathogens10020125
Project: MEME
COVID-19 in health-care workers in three hospitals in the south of the Netherlands: a cross-sectional study.
Sikkema, RS., Pas, SD., Nieuwenhuijse, DF., O’Toole, A., Verweij, JJ., van der Linden, A., Chestakova, I., Schapendonk, C., Pronk, M., Lexmond, P., Bestebroer, T., Overmars, RJ., van Nieuwkoop, S., van den Bijllaardt, W., Bentvelsen RG., van Rijen, MML., Buiting, AGM., van Oudheusden, AJG., Diederen, BM., Bergmans, AMC., van der Eijk, A., Molenkamp, R., Rambaut, A., Timen, A., Kluytmans, JAJW., Oude Munnink, BB., Kluytmans van den Bergh, MFQ., Koopmans, MPG. (2021). The Lancet: Infectious Disease. 20(11), p1273-1280
DOI: https://doi.org/10.1016/S1473-3099(20)30527-2
Project: METASTAVA
Co-occurrence of the blaVIM-1 and blaSHV-12 genes on an IncHI2 plasmid of an Escherichia coli isolate recovered from German livestock.
Pauly, N., Hammerl, JA., Schwarz, S., Grobbel, M., Meemken, D., Malorny, B., Tenhagen, BA., Käsbohrer, A., Irrgang, A. (2020). Journal of Antimicrobial Chemotherapy. 76(2), 531–533.
DOI: https://doi.org/10.1093/jac/dkaa436
Project: IMPART
Molecular Characterisation of Giardia duodenalis in Children and Adults Sampled in Algeria.
Belkessa, S., Thomas-Lopez, D., Houali, K., Ghalmi, F., Stensvold, C R. (2021). Microorganisms. 9 (1), 54.
DOI: https://doi.org/10.3390/microorganisms9010054
Project: PARADISE
2020
Genetic Characterisation of a Listeria monocytogenes Serotype IV b Variant 1 Strain Isolated from Vegetal Matrix in Italy.
Torresi, M., Orsini, M., Acciari, V., Centorotola, G., Di Lollo, V., Di Domenico, M, Manila Bianchi, D., Wakwamba Ziba, M., Tramuta, C., Cammà, C., Pomilioa, F. (2020). Microbiology Resource Announcements. 9:e00782-20.
DOI: https://doi.org/10.1128/MRA.00782-20
Project: LISTADAPT
Population genomics and antimicrobial resistance in Corynebacterium diphtheriae.
Hennart, M., Panunzi, LG., Rodrigues, C., Gaday, Q., Baines, SL., Barros-Pinkelnig, M., Carmi-Leroy, A., Dazas, M., Wehenkel, AM., Didelot, X., Toubiana, J., Badell, E., Brisse, S. (2020). Genome Medicine. 12, p 1-18.
DOI: https://doi.org/10.1186/s13073-020-00805-7
Project: Codes4strains (PhD)
Rapid SARS-CoV-2 whole-genome sequencing and analysis for informed public health decision-making in the Netherlands.
Oude Munnink, BB., Nieuwenhuijse, DF., Stein, M., O’Toole, A., Haverkate, M., Mollers, M., Kamga, SK., Schapendonk, C., Pronk, M., Lexmond, P., van der Linden, A., Bestebroer, T., Chestakova, I., Overmars, RJ., van Nieuwkoop, S., Molenkamp, R., van der Eijk, AA,. Geurtsvan Kessel, C., Vennema, H., Meijer, A., Rambaut, A., van Dissel, J., Sikkema, RS., Timen, A., Koopmans, M. (2020). Nature Medicine. 26, p 1405–1410.
DOI: https://doi.org/10.1038/s41591-020-0997-y
Project: METASTAVA
Mobile colistin resistance gene mcr-1 detected on an IncI1 plasmid in Escherichia coli from meat.
Brouwer, MSM., Goodman, RN., Kant, A., Mevius, D., Newire, E., Roberts, AP., Veldman, KT. (2020). Journal of Global Antimicrobial Resistance. 23, 145-148.
DOI: https://doi.org/10.1016/j.jgar.2020.08.018
Project: ARDIG
Identification of a blaVIM-1-Carrying IncA/C2 Multiresistance Plasmid in an Escherichia coli Isolate Recovered from the German Food Chain.
Pauly, N., Hammerl, JA., Grobbel, M., Käsbohrer, A., Tenhagen, BA., Malorny, B., Schwarz, S., Meemken, D., Irrgang, A. (2020). Microorganisms. 9, 29.
DOI: https://doi.org/10.3390/20microorganisms9010029
Project: IMPART
Diversity of mucoid to non-mucoid switch among carbapenemase-producing Klebsiella pneumoniae.
Chiarelli, A., Cabanel, N., Rosinski-Chupin, I., Zongo PD., Naas. T., Bonnin, RA., Glaser, P. (2020). BMC Microbiology, 20, 325.
DOI: https://doi.org/10.1186/s12866-020-02007-y
Project: MedVetKlebs
The importance of using whole genome sequencing and extended spectrum beta-lactamase selective media when monitoring antimicrobial resistance.
Duggett, N., AbuOun, M., Randall, L., Horton, R., Lemma, F., Rogers, J., Crook, D., Teale, C., Anjum, MF. (2020). Scientific Reports. 10, 19880.
DOI: https://doi.org/10.1038/s41598-020-76877-7
Project: ARDIG
Temporal dynamics of the fecal microbiota in veal calves in a 6-month field trial.
Massot, M., Haenni, M., Nguyen, TT., Madec, JY., Mentré, F., Denamur, E. (2020). Animal Microbiome. 2(32).
DOI: https://doi.org/10.1186/s42523-020-00052-6
Project: ARDIG
Modelling spread and surveillance of Mycobacterium avium subsp. paratuberculosis in the Swedish cattle trade network.
Rosendal, T., Widgren, S., Ståhl, K., Frössling, J. (2020). Preventative Veterinary Medicine. 183, 105152.
DOI: https://doi.org/10.1016/j.prevetmed.2020.105152
Project: NOVA
Novel IncFII plasmid harbouring blaNDM-4 in a carbapenem-resistant Escherichia coli of pig origin, Italy.
Diaconu, EL., Carfora, V., Alba, P., Di Matteo, P., Stravino, F., Buccella, C., Dell’Aira, E., Onorati, R., Sorbara, L., Battisti, A., Franco, A. (2020). Journal of Antimicrobial Chemotherapy. 75(12), 3475–3479.
DOI: https://doi.org/10.1093/jac/dkaa374
Project: IMPART and FULL-FORCE
First Detection of GES-5-Producing Escherichia coli from Livestock—An Increasing Diversity of Carbapenemases Recognized from German Pig Production.
Irrgang, A., Tausch SH., Pauly, N., Grobbel, M., Kaesbohrer, A,. Hammerl, JA. (2020). Microorganisms. 8 (10), 159.
DOI: https://doi.org/10.3390/microorganisms8101593
Project: IMPART
ChromID® CARBA Agar Fails to Detect Carbapenem-Resistant Enterobacteriaceae With Slightly Reduced Susceptibility to Carbapenems.
Pauly, N., Hammerl, JA., Grobbel, M., Tenhagen, BA., Käsbohrer, A., Bisenius, S., Fuchs, J., Horlacher, S., Lingstädt, H., Mauermann, U., Mitro, S., Müller, M., Rohrmann, S., Schiffmann, AP., Stührenberg, B., Zimmermann, P., Schwarz, S., Meemken, D., Irrgang, A. (2020). Frontiers in Microbiology. 11, 1678.
DOI: https://doi.org/10.3389/fmicb.2020.01678
Project: IMPART
Spill-Over from Public Health? First Detection of an OXA-48-Producing Escherichia coli in a German Pig Farm.
Irrgang, A., Pauly, N., Tenhagen, BA., Grobbel, M., Kaesbohrer, A., Hammerl, JA. (2020). Microorganisms. 8(6), 855.
DOI: https://doi.org/10.3390/microorganisms8060855
Project: IMPART
Comparison of Two DNA Extraction Methods and Two PCRs for Detection of Echinococcus multilocularis in the Stool Samples of Naturally Infected Red Foxes.
Skrzypek, K., Karamon, J., Samorek-Pieróg, M., Dąbrowska, J., Kochanowski, M., Sroka, J., Bilska-Zając, E., Cencek Tomasz. (2020). Animals. 10, 2381.
DOI: https://doi.org/10.3390/ani10122381
Project: MeME
The state of One Health research across disciplines and sectors – a bibliometric analysis.
Sarah Humboldt-Dachroeden, S., Olivier, R., Frid-Nielsen, SS. (2020). One Health, 10, pp. 100146.
DOI: 10.1016/j.onehlt.2020.100146
Project: SUSTAIN (PhD)
Using stochastic dynamic modelling to estimate the sensitivity of current and alternative surveillance program of Salmonella in conventional broiler production.
Apenteng, OO., Arnold, ME., Vigre, H. (2020). Scientific Reports, 10, pp. 19441.
DOI: https://doi.org/10.1038/s41598-020-76514-3
Project: NOVA
Whole-Genome Sequencing to Detect Numerous Campylobacter jejuni Outbreaks and Match Patient Isolates to Sources, Denmark, 2015–2017.
Joensen, KG., Kiil, K., Gantzhorn, MR.,Nauerby, B., Engberg, J., Holt, HM.,Nielsen, HL.,Petersen, AM., Kuhn, KG.,Sandø, G.,Ethelberg, S., Nielsen, EM. (2020). Emerging Infectious Diseases, 26(3), 523-532.
DOI: https://dx.doi.org/10.3201/eid2603.190947
Project: ORION
Novel enteric viruses in fatal enteritis of grey squirrels.
Dastjerdi, A., Benfield, C., Everest, D., Stidworthy, MF., Zell, R. (2020). Journal of General Virology, 101, pp. 746–75.
DOI: https://doi.org/10.1099/jgv.0.001431
Project: MAD-Vir
An alternative workflow for molecular detection of SARS-CoV-2 – escape from the NA extraction kit-shortage, Copenhagen, Denmark, March 2020.
Fomsgaard, AS., Rosenstierne, MW. (2020). Eurosurveillance. 25(14), pp: 2000398.
DOI: https://doi.org/10.2807/1560-7917.ES.2020.25.14.2000398
Project: TELE-Vir
Cost-effectiveness analysis of using probiotics, prebiotics, or synbiotics to control Campylobacter in broilers.
van Wagenberg, CPA., van Horne, P.L.M., van Asseldonk, M.A.P.M. (2020). Poultry Science. 99 (8), pp. 4077- 4084.
DOI: https://doi.org/10.1016/j.psj.2020.05.003
Project: MOMIR
Climatic and topographic tolerance limits of wile boar in Eurasia: implications for their expansion.
Bosch, J., Iglesias, I., Martínez, M., de la Torre, A. (2020). Geography, Environment, Sustainability, 13(1), pp.107-114.
DOI: https://doi.org/10.24057/2071-9388-2019-52
Project: NOVA
A Multi-Scale Epidemic Model of Salmonella infection with Heterogeneous Shedding.
Labarthe, S., Laroche, B., Nguyen, T. N. T., Polizzi, B., Patout, F., Ribot, M., Stegmaier, T. (2020). ESAIM: Proceedings and Surveys, 67, p. 261-284.
DOI: https://doi.org/10.1051/proc/202067015
Project: MOMIR
A multi-center proposal for a fast screening tool in biosecured chicken flocks. Foodborne Campylobacter.
Hoorfar, J., Koláčková, I., Johannessen, GS., Garofolo, G., Marotta, F., Wieczorek, K., Osek, J., Torp, M., Spilsberg, B., Sekse, C., Thornval, NR., Karpíšková, R. (2020). Applied and Environmental Microbiology,
Project: AIRSAMPLE
Extensive antimicrobial resistance mobilization via multicopy plasmid encapsidation mediated by temperate phages.
Rodriguez-Rubio, L., Serna, C., Ares-Arroyo, M., Matamoros, BR., Delgado-Blas, JF., Montero, N., Bernabe-Balas, C., Wedel, EF., Mendez, IS., Muniesa, M., Gonzalez-Zorn, B. (2020). Journal of Antimicrobial Chemotherapy, 75 (11), pp. 3173–3180.
DOI: https://doi.org/10.1093/jac/dkaa311
Project: ARDIG
First report on the occurrence of Listeria monocytogenes ST121 strain in a dolphin brain.
Sévellec, Y., Torresi, M., Félix, B., Palma, F., Centorotola, G., Bilei, S., Senese, M., Terracciano, G., Leblanc, JC., Pomilio, F., Roussel, S. (2020). Pathogens. 9 (10), 802.
DOI: https://doi.org/10.3390/pathogens9100802
Project: LISTADAPT
Cystic Echinococcosis: Clinical, Immunological, and Biomolecular Evaluation of Patients from Sardinia (Italy).
Santucciu, C., Bonelli, P., Peruzzu, A., Fancellu, A., Marras, V., Carta, A., Mastrandrea, S., Bagella, G., Piseddu, T., Profili, S., Porcu, A., Masala, G. (2020). Pathogens. 9 (11), 907.
DOI: https://doi.org/10.3390/pathogens9110907
Project: MeME
Expression of in vivo biotinylated recombinant antigens SAG1 and SAG2A from Toxoplasma gondii for improved seroepidemiological bead-based multiplex assays.
Klein, S., Stern, D., Seeber, F. (2020). BMC Biotechnology. 20, 53.
DOI: https://doi.org/10.1186/s12896-020-00646-7
Project: TOXOSOURCES
Reduction of Salmonella Typhimurium cecal colonisation and improvement of intestinal health in broilers supplemented with fermented defatted ‘alperujo’, an olive oil by-product
Rebollada-Merino, A., Ugarte-Ruiz, M., Hernández, M., Miguela-Villoldo, P., Abad, D., Rodríguez-Lázaro, D., de Juan, L., Domínguez, L., Rodríguez-Bertos, A. (2020). Animals. 10 (10), 1931.
DOI: https://doi.org/10.3390/ani10101931
Project: MOMIR
A validated method to identify Echinococcus granulosus sensu lato at species level.
Santolamazza, F., Santoro, A., Possenti, A., Cacciò, S M., Casulli, A. (2020). Infection, Genetics and Evolution. 85, 104575.
DOI: https://doi.org/10.1016/j.meegid.2020.104575
Project: MeME
Bayesian Analysis of Three Methods for Diagnosis of Cystic Echinococcosis in Sheep.
Bonelli , P., Loi, F., Cancedda, MG., Peruzzu, A., Antuofermo, E., Pintore, E., Piseddu, T., Garippa, G., Masalam G. (2020). Pathogens. 9(10), 796.
DOI: https://doi.org/10.3390/pathogens9100796
Project: MeME
Species Detection within the Echinococcus granulosus sensu lato Complex by Novel Probe-Based Real-Time PCRs.
Maksimov, P., Bergmann, H., Wassermann, M., Romig, T., Gottstein, B., Casulli, A., Conraths, FJ. (2020). Pathogens, 9(10), 791.
DOI: https://doi.org/10.3390/pathogens9100791
Project: MeME
Dietary supplementation with fermented defatted “alperujo” induces modifications of the intestinal mucosa and cecal microbiota of broiler chickens.
Rebollada-Merino, A., Ugarte-Ruiz, M., Hernández, M., Miguela-Villoldo, P., Abad, D., Cuesta-Álvaro, P., Rodríguez-Lázaro, D., de Juan, L., Domínguez, L., Rodríguez-Bertos, A. (2020). Poultry Science.
DOI: https://doi.org/10.1016/j.psj.2020.07.015
Project: MOMIR
Gut microbiota composition before infection determines the Salmonella super‐ and low‐shedder phenotypes in chicken.
Kempf, F., Menanteau, P., Rychlik, I., Kubasová, T., Trotereau, J., Virlogeux‐Payant, I., Schaeffer, S., Schouler, C., Drumo, R., Guitton, E., Velge, P. (2020). Microbial Biotechnology. 13( 5), 1611– 1630.
DOI: https://doi.org/10.1111/1751-7915.13621
Project: MOMIR
Isolation and genetic characterization of Toxoplasma gondii in Spanish sheep flocks.
Fernández-Escobar, M., Calero-Bernal, R., Benavides, J., Regidor-Cerrillo, J., Guerrero-Molina, M. C., Gutiérrez-Expósito, D., Collantes-Fernández, E., Ortega-Mora, L. M. (2020). Parasites and Vectors.
DOI: https://doi.org/10.1186/s13071-020-04275-z
Project: TOXOSOURCES
Fluorescent bead-based serological detection of Toxoplasma gondii infection in chickens.
Fabian, B. T., Hedar, F., Koethe, M., Bangoura, B., Maksimov, P., Conraths, F. J., Villena, I., Aubert, D., Seeber, F., Schares, G. (2020). Parasites and Vectors.
DOI: https://doi.org/10.1186/s13071-020-04244-6
Project: TOXOSOURCES
Veterinary Students Have A Higher Risk Of Contracting Cryptosporidiosis When Calves With High Fecal Cryptosporidium Loads Are Used For Fetotomy Exercises.
Lopez, T., Müller, L., Vestergaard, LS., Applied and Environmental Microbiology.
DOI: https://doi.org/10.1128/AEM.01250-20
Project: PARADISE
The One Health European Joint Programme (OHEJP), 2018–2022: an exemplary One Health initiative.
Brown, HL., Passey, JL., Getino, M., Pursley, I., Basu, P., Horton, DL., La Ragione, RM. (2020). Journal of Medical Microbiology, pp 1-3.
DOI: https://doi.org/10.1099/jmm.0.001228
MLST-based genetic relatedness of Campylobacter jejuni isolated from chickens and humans in Poland
Wieczorek, K., Wołkowicz, T., Osek, J. (2020). PLOS ONE, 15(1), e0226238
DOI: https://doi.org/10.1371/journal.pone.0226238
Project: AIRSAMPLE
Effects on Intestinal Mucosal Morphology, Productive Parameters and Microbiota Composition after Supplementation with Fermented Defatted Alperujo (FDA) in Laying Hens
Rebollada-Merino A., Bárcena C., Ugarte-Ruiz M., Porras-González N., Mayoral-Alegre F., Tome-Sánchez I., Domínguez L. and Rodríguez-Bertos A. (2020). Antibiotics, 8(4), pp. 215
DOI: https://doi.org/10.3390/antibiotics8040215
Project: MedVetKlebs
Broad-Spectrum Cephalosporin-Resistant Klebsiella spp. Isolated from Diseased Horses in Austria
Loncaric, I., Rosel, AC., Szostak, MP., Licka, TF., Allerberger, F., Ruppitsch, W., Spergser, J. (2020). Animals, 10(2), pp. 332
DOI: https://doi.org/10.3390/ani10020332
Project: MedVetKlebs
Campylobacter in chicken- Critical parameters for international, multi-centre evaluation of air sampling and detection method
Johannessen, GS., Giuliano Garofolo, G., Di Serafino, G.,Koláčková, I., Karpíšková, R., Wieczorek, K., Osek, J., Christensen, J., Torp, M., Hoorfar, J. (2020). Food Microbiology, 90, 1-6
DOI: https://doi.org/10.1016/j.fm.2020.103455
Project: AIRSAMPLE
Evaluation of a commercial exogenous internal process control for diagnostic RNA virus metagenomics from different animal clinical samples
Van Borm, S., Fu, Q., Winand, R., Vanneste, K., Hakhverdyan, M., Höper, D., Vandenbussche, F. (2020). Journal of Virological Methods, 283
DOI: https://doi.org/10.1016/j.jviromet.2020.113916
Project: METASTAVA
Klebsiella pneumoniae carriage in low-income countries: antimicrobial resistance, genomic diversity and risk factors
Huynh, BT., Passet, V., Rakotondrasoa, A.,. Diallo, T., Kerleguer, A., Hennart, M., Lauzanne, A., Herindrainy, P., Seck, A., Bercion, R., Borand, L., Pardos de la Gandara, M., Delarocque-Astagneau, E., Guillemot, D., Vray, M., Garin, B., Collard, JM., Rodrigues, C., Brisse, S. (2020). Gut Microbes, 11(5), pp. 1287-1299
DOI: https://doi.org/10.1080/19490976.2020.1748257
Project: MedVetKlebs
The ZKIR Assay, a Real-Time PCR Method for the Detection of Klebsiella pneumoniae and Closely Related Species in Environmental Samples
Barbier, E., Rodrigues, C., Depret, G., Passet, V., Gal, L., Piveteau, P., Brisse, S. (2020). Applied and Environmental Microbiology, 86(7), pp. e02711-19.
DOI: https://doi.org/10.1128/AEM.02711-19
Project: MedVetKlebs
Stepwise evolution and convergent recombination underlie the global dissemination of carbapenemase-producing Escherichia coli
Patiño-Navarrete, R., Rosinski-Chupin, I., Cabanel, N., Gauthier, L., Takissian, J., Madec, JY., Hamze, M., Bonnin, RA., Naas, T., Glaser, P. (2020). Genome Medicine, 12(10)
DOI: https://doi.org/10.1186/s13073-019-0699-6
Project: ARDIG
Microsatellite Investigations of Multiple Echinococcus granulosus Sensu Stricto Cysts in Single Hosts Reveal Different Patterns of Infection Events between Livestock and Humans
M’rad, S., Oudni-M’rad, M., Bastid, V., Bournez, L., Mosbahi, S., Nouri, A., Babba, H., Grenouillet, F., Boué, F., Umhang, G. (2020). Pathogens, 9(6), pp. 444
DOI: https://doi.org/10.3390/pathogens9060444
Project: MeME
Analysis of COMPASS, a New Comprehensive Plasmid Database Revealed Prevalence of Multireplicon and Extensive Diversity of IncF Plasmids.
Douarre, P E., Mallet, L., Radomski, N., Felten, A., Mistou, M. (2020) Frontiers in Microbiology, 11, pp. 1-15.
DOI: https://doi.org/10.3389/fmicb.2020.00483.
Project: RaDAR
Recognising the substantial burden of neglected pandemics cystic and alveolar echinococcosis.
Casulli, A. (2020) The Lancet, 8 (4): PE470-E471
DOI: https://doi.org/10.1016/S2214-109X(20)30066-8
Project: MeME
2019
Opportunities for Improved Disease Surveillance and Control by Use of Integrated Data on Animal and Human Health.
Houe, H., Nielsen, SS., Nielsen, LR., Ethelberg, S., Mølbak, K. (2020). Frontiers in Veterinary Medicine, 6: 301, pp. 1-8.
DOI: https://doi.org/10.3389/fvets.2019.00301
Project: ORION
An outbreak of monophasic Salmonella Typhimurium associated with raw pork sausage and other pork products, Denmark 2018–19.
Helmuth, IG., Espenhain, L., Ethelberg, S., Jensen, T., Kjeldgaard, J., Litrup, E., Schjørring, S., Müller, L. (2019). Epidemiology and Infection, 147, pp. e315.
DOI: https://doi.org/10.1017/S0950268819002073
Project: NOVA
Whole genome sequencing reveals resemblance between ESBL-producing and carbapenem resistant Klebsiella pneumoniae isolates from Austrian rivers and clinical isolates from hospitals.
Lepuschitz, S., Schill, S., Stoeger, A., Pekard-Amenitsch, S., Huhulescu, S., Inreiter, N., Hartl, R., Kerschner, H., Sorschag, S., Springer, B., Brisse, S., Allerberger, F., Mach, RL., Ruppitsch, W. (2019). Science of the Total Environment, 662, pp. 227-235.
DOI: https://doi.org/10.1016/j.scitotenv.2019.01.179
Project: MedVetKlebs
Antimicrobial Usages and Antimicrobial Resistance in Commensal Escherichia coli From Veal Calves in France: Evolution During the Fattening Process.
Gay, E., Bour, M., Cazeau, G., Jarrige, N., Martineau, C., Madec, JY., Haenni, M. (2019). Frontiers in Microbiology, 10, pp. 792.
DOI: https://doi.org/10.3389/fmicb.2019.00792
Project: ARDIG
The shufflon of IncI1 plasmids is rearranged constantly during different growth conditions
Brouwer, MSM., Jurburg, SD., Harders, F., Kant, A., Mevius, DJ., Roberts, AP., Bossers, A. (2019). Plasmid, 120, pp. 51-55
DOI: https://doi.org/10.1016/j.plasmid.2019.03.003
Project: ARDIG
Description of Klebsiella spallanzanii sp. nov. and of Klebsiella pasteurii sp. nov.
Merla C, Rodrigues C, Passet V, Corbella M, Thorpe H A, Kallonen T V S, Zong Z, Marone P, Bandi C, Sassera D, Corander J, Feil E J and Brisse S. (2019). Frontiers in Microbiology
DOI: https://doi.org/10.3389/fmicb.2019.02360
Project: MedVetKlebs
Identifying emerging trends in antimicrobial resistance using Salmonella surveillance data in poultry in Spain
Alvarez J., Lopez G., Muellner P., de Frutos C., Ahlstrom C., Serrano T., Moreno MA., Duran M., Saez JL., Dominguez L., Ugarte-Ruiz M. (2019). Transboundary and Emerging Diseases, 67(1), pp. 250-262
DOI: https://doi.org/10.1111/tbed.13346
Project: NOVA
Monitoring Antimicrobial Resistance and Drug Usage in the Human and Livestock Sector and Foodborne Antimicrobial Resistance in Six European Countries.
Mesa Varona, O., Chaintarli, K., Muller-Pebody, B., Anjum, MF., Eckmanns, T., Norström, M., Boone, I. (2019). Dovepress, 13, pp. 957-993
DOI: https://doi.org/10.2147/IDR.S237038
Project: ARDIG
Salmonella Surveillance Systems in Swine and Humans in Spain: A Review.
Marta Martínez-Avilés, Macarena Garrido-Estepa, Julio Álvarez, Ana de la Torre. (2019). Veterinary Sciences. 6, 20
Project: NOVA
Field samplings of Ixodes ricinus ticks from a tick-borne encephalitis virus micro-focus in Northern Zealand, Denmark.
Petersen A, Rosenstierne MW, Rasmussen M, Fuursted K, Nielsen HV, O’Brien Andersen L, Bødker R, Fomsgaard A. (2019) Ticks and Tick Borne Disease, 10(5):1028-1032.
DOI: 10.1016/j.ttbdis.2019.05.005.
Project: MAD-Vir
Attributable sources of community-acquired carriage of Escherichia coli containing β-lactam antibiotic resistance genes: a population-based modelling study.
Mughini-Gras L, Dorado-García A, van Duijkeren E, van den Bunt G, Dierikx CM, Bonten MJM, Bootsma MCJ, Schmitt H, Hald T, Evers EG, de Koeijer A, van Pelt W, Franz E, Mevius DJ, Heederik DJJ; ESBL Consortium. (2019) Lancet Planetary Health. 3(8):e357-e369.
DOI: 10.1016/S2542-5196(19)30130-5
Project: RaDAR
List of new names and new combinations previously effectively, but not validly, published.
Oren and Garrity. (2019) International Journal of Systematic and Evolutionary Microbiology, 69:2627–2629
DOI:DOI 10.1099/ijsem.0.003624
Project: MedVetKlebs
Outbreak of Yersinia bactin-producing Klebsiella pneumoniae in a Neonatal Intensive Care Unit
Wisgrill L, Lepuschitz S, Blaschitz M, Rittenschober-Böhm J, Diab-El Schahawi M, Schubert S, et al. (2019) The Pediatric Infectious Disease Journal, 38:638-42
DOI: https://doi.org/10.1097/INF.0000000000002258
Project: MedVetKlebs
Toxoplasma gondii infection and toxoplasmosis in farm animals: Risk factors and economic impact
Stelzer, S., Basso, W., Benavides Silván, J., Ortega-Mora, L.M., Maksimov, P., Gethmann, J., Conraths, F.J., Schares, G. (2019). . Food and Waterborne Parasitology, 12, pp. e00037.
DOI: http://doi.org/10.1016/j.fawpar.2019.e00037
Project: ORION
Description of Klebsiella africanensis sp. nov., Klebsiella variicola subsp. tropicalensis subsp. nov. and Klebsiella variicola subsp. variicola subsp. nov.
Rodrigues, C., Passet V., Rakotondrasoa, A., Diallo, TA., Criscuolo, A., Brisse, S. (2019) Research in Microbiology.
DOI: https://doi.org/10.1016/j.resmic.2019.02.003
Project: MedVetKlebs
2018
Role of systemic infection, cross contaminations and super-shedders in Salmonella carrier state in chicken.
Menanteau, P. Kempf, F., Trotereau, J., Virlogeux-Payant, I., Gitton, E., Dalifard, J., Gabriel, I., Rychlik, I., Velge, P. (2018). Environmental Microbiology. 20 (9), 3246–3260.
DOI: https://doi.org/10.1111/1462-2920.14294
Project: MOMIR
Non-Typhi, non-Paratyphi Salmonella-related hospitalisations in Spain: trends, clinical aspects, risk factors for worse prognosis and hospital costs.
Garrido-Estepa, M., Latasa, P., Ordóñez-León, G.Y. et al. (2018) European Journal of Clinical Microbiology and Infectious Disease.
DOI: 10.1007/s10096-018-3433-1
ISSN: 1435-4373
Project: NOVA
Analysis of consumer food purchase data used for outbreak investigations, a review.
Møller Frederik T, Mølbak Kåre, Ethelberg Steen. (2018) Euro Surveill.
DOI: 10.2807/1560-7917.ES.2018.23.24.1700503
Project: NOVA
Population Genetic Structure of Listeria monocytogenes Strains Isolated From the Pig and Pork Production Chain in France.
Félix B, Feurer C, Maillet A, Guillier L, Boscher E, Kerouanton A, Denis M, Roussel S. (2018). Front. Microbiol.
Project: LISTADAPT
Veterinarios y antibióticos: destinados a entenderse.
Moreno MA., Florez-Cuadrado D., Ugarte-Ruiz M. and Dominguez L. (2018).Profesión Veterinaria. Asis,
ISBN: 2253-7244. 2018.
Project: MoMIR-PPC
Antimicrobial Resistance in the Food Chain in the European Union.
Florez-Cuadrado D., Moreno MA., Ugarte-Ruiz M. and Dominguez L. (2018). Advances in Food and Nutrition Research. Elsevier
ISBN: 9780128139776. 2018
DOI: 10.1016/bs.afnr.2018.04.004
Project: MoMIR-PPC
Role of systemic infection, cross contaminations and super-shedders in Salmonella carrier state in chicken.
Menanteau P, Kempf F, Trotereau J, Virlogeux-Payant I, Guitton E, Dalifard J, Gabriel I, Rychlik I, and Velge P. (2018). Environmental Microbiology.
Project: MoMIR-PPC
Identification of Klebsiella pneumoniae, Klebsiella quasipneumoniae, Klebsiella variicola and related phylogroups by MALDI-TOF Mass Spectrometry.
Rodrigues C, Passet V, Rakotondrasoa A, Brisse S (2018). Front. Microbiol. 9:3000
Project: MedVetKlebs
