Publications

2020

The One Health European Joint Programme (OHEJP), 2018–2022: an exemplary One Health initiative.

Brown, HL., Passey, JL., Getino, M., Pursley, I., Basu, P., Horton, DL., La Ragione, RM. (2020). Journal of Medical Microbiology, pp 1-3.

DOI: https://doi.org/10.1099/jmm.0.001228

MLST-based genetic relatedness of Campylobacter jejuni isolated from chickens and humans in Poland

Wieczorek, K., Wołkowicz, T., Osek, J. (2020). PLOS ONE, 15(1), e0226238

DOI: https://doi.org/10.1371/journal.pone.0226238

Project: AIRSAMPLE

Effects on Intestinal Mucosal Morphology, Productive Parameters and Microbiota Composition after Supplementation with Fermented Defatted Alperujo (FDA) in Laying Hens

Rebollada-Merino A., Bárcena C., Ugarte-Ruiz M., Porras-González N., Mayoral-Alegre F., Tome-Sánchez I., Domínguez L. and Rodríguez-Bertos A. (2020). Antibiotics, 8(4), pp. 215

DOI: https://doi.org/10.3390/antibiotics8040215

Project: MedVetKlebs

Broad-Spectrum Cephalosporin-Resistant Klebsiella spp. Isolated from Diseased Horses in Austria

Loncaric, I., Rosel, AC., Szostak, MP., Licka, TF., Allerberger, F., Ruppitsch, W., Spergser, J. (2020). Animals, 10(2), pp. 332

DOI: https://doi.org/10.3390/ani10020332

Project: MedVetKlebs

Campylobacter in chicken- Critical parameters for international, multi-centre evaluation of air sampling and detection method

Johannessen, GS., Giuliano Garofolo, G., Di Serafino, G.,Koláčková, I., Karpíšková, R., Wieczorek, K., Osek, J.,  Christensen, J., Torp, M., Hoorfar, J. (2020). Food Microbiology, 90, 1-6

DOI: https://doi.org/10.1016/j.fm.2020.103455

Project: AIRSAMPLE

Evaluation of a commercial exogenous internal process control for diagnostic RNA virus metagenomics from different animal clinical samples

Van Borm, S., Fu, Q., Winand, R., Vanneste, K., Hakhverdyan, M., Höper, D., Vandenbussche, F. (2020). Journal of Virological Methods, 283

DOI: https://doi.org/10.1016/j.jviromet.2020.113916

Project: METASTAVA

Klebsiella pneumoniae carriage in low-income countries: antimicrobial resistance, genomic diversity and risk factors

Huynh, BT., Passet, V., Rakotondrasoa, A.,. Diallo, T., Kerleguer, A., Hennart, M., Lauzanne, A., Herindrainy, P., Seck, A., Bercion, R., Borand, L., Pardos de la Gandara, M., Delarocque-Astagneau, E., Guillemot, D., Vray, M., Garin, B., Collard, JM., Rodrigues, C., Brisse, S. (2020). Gut Microbes, 11(5), pp. 1287-1299

DOI: https://doi.org/10.1080/19490976.2020.1748257

Project: MedVetKlebs

The ZKIR Assay, a Real-Time PCR Method for the Detection of Klebsiella pneumoniae and Closely Related Species in Environmental Samples

Barbier, E., Rodrigues, C., Depret, G., Passet, V., Gal, L., Piveteau, P., Brisse, S. (2020). Applied and Environmental Microbiology, 86(7), pp. e02711-19.

DOI: https://doi.org/10.1128/AEM.02711-19

Project: MedVetKlebs

Stepwise evolution and convergent recombination underlie the global dissemination of carbapenemase-producing Escherichia coli

Patiño-Navarrete, R., Rosinski-Chupin, I., Cabanel, N., Gauthier, L., Takissian, J., Madec, JY., Hamze, M., Bonnin, RA., Naas, T., Glaser, P. (2020). Genome Medicine, 12(10)

DOI: https://doi.org/10.1186/s13073-019-0699-6

Project: ARDIG

Microsatellite Investigations of Multiple Echinococcus granulosus Sensu Stricto Cysts in Single Hosts Reveal Different Patterns of Infection Events between Livestock and Humans

M’rad, S., Oudni-M’rad, M., Bastid, V., Bournez, L., Mosbahi, S., Nouri, A., Babba, H., Grenouillet, F., Boué, F., Umhang, G. (2020). Pathogens, 9(6), pp. 444

DOI: https://doi.org/10.3390/pathogens9060444

Project: MeME

Analysis of COMPASS, a New Comprehensive Plasmid Database Revealed Prevalence of Multireplicon and Extensive Diversity of IncF Plasmids.

Douarre, P E., Mallet, L., Radomski, N., Felten, A., Mistou, M. (2020) Frontiers in Microbiology, 11, pp. 1-15.

DOI: https://doi.org/10.3389/fmicb.2020.00483.

Project: RaDAR

Recognising the substantial burden of neglected pandemics cystic and alveolar echinococcosis.

Casulli, A. (2020) The Lancet, 8 (4): PE470-E471

DOI: https://doi.org/10.1016/S2214-109X(20)30066-8

Project: MeME

2019

The shufflon of IncI1 plasmids is rearranged constantly during different growth conditions

Brouwer, MSM., Jurburg, SD., Harders, F., Kant, A., Mevius, DJ., Roberts, AP., Bossers, A. (2019). Plasmid, 120, pp. 51-55

DOI: https://doi.org/10.1016/j.plasmid.2019.03.003

Project: ARDIG

Description of Klebsiella spallanzanii sp. nov. and of Klebsiella pasteurii sp. nov.

Merla C, Rodrigues C, Passet V, Corbella M, Thorpe H A, Kallonen T V S, Zong Z, Marone P, Bandi C, Sassera D, Corander J, Feil E J and Brisse S. (2019). Frontiers in Microbiology

DOI: https://doi.org/10.3389/fmicb.2019.02360

Project: MedVetKlebs

Identifying emerging trends in antimicrobial resistance using Salmonella surveillance data in poultry in Spain

Alvarez J., Lopez G., Muellner P., de Frutos C., Ahlstrom C., Serrano T., Moreno MA., Duran M., Saez JL., Dominguez L., Ugarte-Ruiz M. (2019). Transboundary and Emerging Diseases, 67(1), pp. 250-262

DOI: https://doi.org/10.1111/tbed.13346

Project: NOVA

Monitoring Antimicrobial Resistance and Drug Usage in the Human and Livestock Sector and Foodborne Antimicrobial Resistance in Six European Countries.

Mesa Varona, O., Chaintarli, K., Muller-Pebody, B., Anjum, MF., Eckmanns, T., Norström, M., Boone, I. (2019). Dovepress, 13, pp. 957-993

DOI: https://doi.org/10.2147/IDR.S237038

Project: ARDIG

Salmonella Surveillance Systems in Swine and Humans in Spain: A Review.

Marta Martínez-Avilés, Macarena Garrido-Estepa, Julio Álvarez, Ana de la Torre. (2019). Veterinary Sciences. 6, 20

DOI:10.3390/vetsci6010020

Project: NOVA

Field samplings of Ixodes ricinus ticks from a tick-borne encephalitis virus micro-focus in Northern Zealand, Denmark.

Petersen A, Rosenstierne MW, Rasmussen M, Fuursted K, Nielsen HV, O’Brien Andersen L, Bødker R, Fomsgaard A. (2019) Ticks and Tick Borne Disease, 10(5):1028-1032.

DOI: 10.1016/j.ttbdis.2019.05.005.

Project: MAD-Vir

Attributable sources of community-acquired carriage of Escherichia coli containing β-lactam antibiotic resistance genes: a population-based modelling study.

Mughini-Gras L, Dorado-García A, van Duijkeren E, van den Bunt G, Dierikx CM, Bonten MJM, Bootsma MCJ, Schmitt H, Hald T, Evers EG, de Koeijer A, van Pelt W, Franz E, Mevius DJ, Heederik DJJ; ESBL  Consortium. (2019) Lancet Planetary Health. 3(8):e357-e369.

DOI: 10.1016/S2542-5196(19)30130-5

Project: RaDAR

List of new names and new combinations previously effectively, but not validly, published.

Oren and Garrity. (2019) International Journal of Systematic and Evolutionary Microbiology, 69:2627–2629

DOI:DOI 10.1099/ijsem.0.003624

Project: MedVetKlebs

Outbreak of Yersinia bactin-producing Klebsiella pneumoniae in a Neonatal Intensive Care Unit

Wisgrill L, Lepuschitz S, Blaschitz M, Rittenschober-Böhm J, Diab-El Schahawi M, Schubert S, et al. (2019) The Pediatric Infectious Disease Journal, 38:638-42

DOI: https://doi.org/10.1097/INF.0000000000002258

Project: MedVetKlebs

Description of Klebsiella africanensis sp. nov., Klebsiella variicola subsp. tropicalensis subsp. nov. and Klebsiella variicola subsp. variicola subsp. nov.

Rodrigues, C., Passet V., Rakotondrasoa, A., Diallo, TA., Criscuolo, A., Brisse, S. (2019) Research in Microbiology.

DOI: https://doi.org/10.1016/j.resmic.2019.02.003

Project: MedVetKlebs

2018

Non-Typhi, non-Paratyphi Salmonella-related hospitalisations in Spain: trends, clinical aspects, risk factors for worse prognosis and hospital costs.

Garrido-Estepa, M., Latasa, P., Ordóñez-León, G.Y. et al. (2018) European Journal of Clinical Microbiology and Infectious Disease.

DOI: 10.1007/s10096-018-3433-1

ISSN: 1435-4373

Project: NOVA

Analysis of consumer food purchase data used for outbreak investigations, a review.

Møller Frederik T, Mølbak Kåre, Ethelberg Steen. (2018) Euro Surveill.

DOI: 10.2807/1560-7917.ES.2018.23.24.1700503

Project: NOVA

Population Genetic Structure of Listeria monocytogenes Strains Isolated From the Pig and Pork Production Chain in France.

Félix B, Feurer C, Maillet A, Guillier L, Boscher E, Kerouanton A, Denis M, Roussel S. (2018). Front. Microbiol.

DOI: 10.3389/fmicb.2018.00684

Project: LISTADAPT

Veterinarios y antibióticos: destinados a entenderse.

Moreno MA., Florez-Cuadrado D., Ugarte-Ruiz M. and Dominguez L. (2018).Profesión Veterinaria. Asis,

ISBN: 2253-7244. 2018.

Project: MoMIR-PPC

Antimicrobial Resistance in the Food Chain in the European Union.

Florez-Cuadrado D., Moreno MA., Ugarte-Ruiz M. and Dominguez L. (2018). Advances in Food and Nutrition Research. Elsevier

ISBN: 9780128139776. 2018

DOI: 10.1016/bs.afnr.2018.04.004

Project: MoMIR-PPC

Role of systemic infection, cross contaminations and super-shedders in Salmonella carrier state in chicken.

Menanteau P, Kempf F, Trotereau J, Virlogeux-Payant I, Guitton E, Dalifard J, Gabriel I, Rychlik I, and Velge P. (2018). Environmental Microbiology.

DOI: 10.1111/1462-2920.14294

Project: MoMIR-PPC

Identification of Klebsiella pneumoniae, Klebsiella quasipneumoniae, Klebsiella variicola and related phylogroups by MALDI-TOF Mass Spectrometry.

Rodrigues C, Passet V, Rakotondrasoa A, Brisse S (2018). Front. Microbiol. 9:3000

DOI: 10.3389/fmicb.2018.03000

Project: MedVetKlebs

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